Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors (Q28610134)

3 February 2017

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Europe PubMed Central

title

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors (English)

1 reference

3 February 2017

James T. Kadonaga

1

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3 February 2017

language of work or name

English

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publication date

23 January 2004

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3 February 2017

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3 February 2017

volume

116

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3 February 2017

issue

2

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3 February 2017

page(s)

247–257

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Nucleosome displacement in transcription

3 February 2017

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Three functional classes of transcriptional activation domain

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Specific protein binding to far upstream activating sequences in polymerase II promoters

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A mechanism for synergistic activation of a mammalian gene by GAL4 derivatives.

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An RNA polymerase II transcription factor binds to an upstream element in the adenovirus major late promoter.

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DNA sequences bound specifically by glucocorticoid receptor in vitro render a heterologous promoter hormone responsive in vivo

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Analysis of Sp1 in vivo reveals multiple transcriptional domains, including a novel glutamine-rich activation motif

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Purified hepatocyte nuclear factor 1 interacts with a family of hepatocyte-specific promoters

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Fos and Jun: the AP-1 connection

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Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

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Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II

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The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter

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Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes

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Chromatin as an essential part of the transcriptional mechanim

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Purification and characterization of OTF-1, a transcription factor regulating cell cycle expression of a human histone H2b gene

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Regulating the regulators: lysine modifications make their mark

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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

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DNAase footprinting a simple method for the detection of protein-DNA binding specificity

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A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

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Functional domains of the human glucocorticoid receptor

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Transcription in yeast activated by a putative amphipathic α helix linked to a DNA binding unit

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Specific DNA binding of GAL4, a positive regulatory protein of yeast

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7 January 2021

Cyclic AMP stimulates somatostatin gene transcription by phosphorylation of CREB at serine 133

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7 January 2021

Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells

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7 January 2021

Cloning of the human glucocorticoid receptor cDNA

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7 January 2021

Homologous recognition of a promoter domain common to the MSV LTR and the HSV tk gene

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7 January 2021

Transcriptional activation of cloned human β-globin genes by viral immediate-early gene products

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7 January 2021

Histone function in transcription

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7 January 2021

Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain

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7 January 2021

A family of immunologically related transcription factors that includes multiple forms of ATF and AP-1

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7 January 2021

Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation

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Association of a 5S gene transcription factor with 5S RNA and altered levels of the factor during cell differentiation

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GCN4 protein, synthesized in vitro, binds HIS3 regulatory sequences: implications for general control of amino acid biosynthetic genes in yeast

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7 January 2021

Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of yeast

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Structural and functional characterization of the short acidic transcriptional activation region of yeast GCN4 protein

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7 January 2021

Transcription factor ATF interacts with the TATA factor to facilitate establishment of a preinitiation complex

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7 January 2021

Transcription factor AP-2 mediates induction by two different signal-transduction pathways: protein kinase C and cAMP.

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7 January 2021

Activation of gene expression by adenovirus and herpesvirus regulatory genes acting in trans and by a cis-acting adenovirus enhancer element

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7 January 2021

O-glycosylation of eukaryotic transcription factors: implications for mechanisms of transcriptional regulation

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7 January 2021

A repressor (MAT alpha 2 Product) and its operator control expression of a set of cell type specific genes in yeast

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7 January 2021

A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication

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7 January 2021

Affinity purification of sequence-specific DNA binding proteins

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7 January 2021

Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain

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7 January 2021

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7 January 2021

Cloning of GT box-binding proteins: a novel Sp1 multigene family regulating T-cell receptor gene expression

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7 January 2021

Chromatin structure and transcription

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7 January 2021

Genomic insulators: connecting properties to mechanism

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7 January 2021

Setting the boundaries of chromatin domains and nuclear organization

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7 January 2021

The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins

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7 January 2021

Threshold phenomena and long-distance activation of transcription by RNA polymerase II

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7 January 2021

Purified transcription factor AP-1 interacts with TPA-inducible enhancer elements

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7 January 2021

Orchestrated response: a symphony of transcription factors for gene control

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7 January 2021

Genetic evidence that an activation domain of GAL4 does not require acidity and may form a beta sheet

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7 January 2021

A new class of yeast transcriptional activators

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7 January 2021

DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract.

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7 January 2021

Combinatorial control of gene expression by nuclear receptors and coregulators

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7 January 2021

Transcriptional Control Signals of a Eukaryotic Protein-Coding Gene

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The proline-rich transcriptional activator of CTF/NF-I is distinct from the replication and DNA binding domain

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7 January 2021

Characterization of a steroid hormone receptor gene and mRNA in wild-type and mutant cells

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7 January 2021

Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins

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7 January 2021

Positive and negative regulation of transcription in vitro: enhancer-binding protein AP-2 is inhibited by SV40 T antigen

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7 January 2021

Binding of a nuclear protein to the cyclic-AMP response element of the somatostatin gene

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Expression of a Bacterial Gene in Mammalian Cells

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How the ubiquitin-proteasome system controls transcription

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A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins

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SV40 gene expression is modulated by the cooperative binding of T antigen to DNA

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7 January 2021

Cooperation between complexes that regulate chromatin structure and transcription

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Mutations affecting segment number and polarity in Drosophila

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Herpes simplex virus regulatory elements and the immunoglobulin octamer domain bind a common factor and are both targets for virion transactivation

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7 January 2021

Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein

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7 January 2021

Transcription factors: structural families and principles of DNA recognition

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Role of chromatin structure in the regulation of transcription by RNA polymerase II.

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A Drosophila RNA polymerase II transcription factor contains a promoter-region-specific DNA-binding activity

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A Drosophila RNA polymerase II transcription factor binds to the regulatory site of an hsp 70 gene

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7 January 2021

Purified glucocorticoid receptors bind selectively in vitro to a cloned DNA fragment whose transcription is regulated by glucocorticoids in vivo

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7 January 2021

Sequence-specific binding of glucocorticoid receptor to MTV DNA at sites within and upstream of the transcribed region

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A regulatory upstream promoter element in the Drosophila hsp 70 heat-shock gene.

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A movable and regulable inactivation function within the steroid binding domain of the glucocorticoid receptor

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7 January 2021

A complex formed between cell components and an HSV structural polypeptide binds to a viral immediate early gene regulatory DNA sequence

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7 January 2021

How eukaryotic transcriptional activators work

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7 January 2021

Transcriptional activation by recruitment

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7 January 2021

Regulation of simian virus 40 early transcription in vitro by a purified tumor antigen

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7 January 2021

The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.

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7 January 2021

GAL4-VP16 is an unusually potent transcriptional activator

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7 January 2021

The binding of a transcription factor to deletion mutants of a 5S ribosomal RNA gene

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7 January 2021

Regulation of transcriptional activation domain function by ubiquitin

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7 January 2021

A family of human CCAAT-box-binding proteins active in transcription and DNA replication: cloning and expression of multiple cDNAs

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7 January 2021

Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region.

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7 January 2021

The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus

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7 January 2021

Identification and purification of a human lymphoid-specific octamer-binding protein (OTF-2) that activates transcription of an immunoglobulin promoter in vitro

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7 January 2021

Acid blobs and negative noodles

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7 January 2021

A nuclear factor that binds to a conserved sequence motif in transcriptional control elements of immunoglobulin genes

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7 January 2021

Molecular cloning of an enhancer binding protein: isolation by screening of an expression library with a recognition site DNA

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7 January 2021

The language of covalent histone modifications

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7 January 2021

Deletion mapping a eukaryotic promoter

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7 January 2021

Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast

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7 January 2021

A 100-kD HeLa cell octamer binding protein (OBP100) interacts differently with two separate octamer-related sequences within the SV40 enhancer

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7 January 2021

The binding site on SV40 DNA for a T antigen-related protein

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7 January 2021

Functional dissection of VP16, the trans-activator of herpes simplex virus immediate early gene expression

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7 January 2021

Evidence of DNA: protein interactions that mediate HSV-1 immediate early gene activation by VP16.

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7 January 2021

The acidic activation domains of the GCN4 and GAL4 proteins are not alpha helical but form beta sheets

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7 January 2021

Cloning of the human estrogen receptor cDNA

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7 January 2021

Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos.

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7 January 2021

Specific in vitro initiation of transcription on conalbumin and ovalbumin genes and comparison with adenovirus-2 early and late genes

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7 January 2021

Selective and accurate initiation of transcription at the ad2 major late promotor in a soluble system dependent on purified rna polymerase ii and dna

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7 January 2021

Identification of human glucocorticoid receptor complementary DNA clones by epitope selection

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7 January 2021

Formation of stable transcription complexes as assayed by analysis of individual templates

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7 January 2021

Purification and properties of Drosophila heat shock activator protein

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7 January 2021

Adenovirus DNA-directed transcription of 5.5S RNA in vitro

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7 January 2021

Steroid receptor regulated transcription of specific genes and gene networks

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7 January 2021

Recruitment of O-GlcNAc transferase to promoters by corepressor mSin3A: coupling protein O-GlcNAcylation to transcriptional repression

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7 January 2021

On the shoulders of giants: p63, p73 and the rise of p53.

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7 January 2021

Transcriptional elongation by RNA polymerase II is stimulated by transactivators.

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7 January 2021

Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails

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7 January 2021