Key challenges for the creation and maintenance of specialist protein resources (Q28646973)

18

0 references

Gerard Manning

9

0 references

Bernard Henrissat

7

0 references

Robert D. Finn

6

0 references

Alex Bateman

20

0 references

Gemma L. Holliday

Gemma L Holliday

1

0 references

Pantelis G. Bagos

Pantelis G Bagos

3

0 references

Claire O'Donovan

Claire O'Donovan

11

0 references

Neil Rawlings

Neil D Rawlings

13

0 references

David Landsman

David Landsman

8

0 references

Michael Spedding

Michael Spedding

16

0 references

Amos Bairoch

Amos Bairoch

2

0 references

David Craik

David J Craik

5

0 references

Nozomi Nagano

Nozomi Nagano

10

0 references

Patricia Babbitt

19

Patricia C Babbitt

0 references

Kim D. Pruitt

12

Kim D Pruitt

0 references

author name string

Arnaud Chatonnet

4

0 references

Milton Saier

14

0 references

Ramanathan Sowdhamini

15

0 references

Narayanaswamy Srinivasan

The InterPro protein families database: the classification resource after 15 years

17

0 references

language of work or name

English

0 references

publication date

June 2015

0 references

published in

Proteins

0 references

volume

83

0 references

issue

6

0 references

page(s)

1005-13

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Rfam 12.0: updates to the RNA families database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The Protein Data Bank archive as an open data resource

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Standardized description of scientific evidence using the Evidence Ontology (ECO)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Pfam: the protein families database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Data, information, knowledge and principle: back to metabolism in KEGG

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

ESTHER, the database of the α/β-hydrolase fold superfamily of proteins: tools to explore diversity of functions

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

neXtProt: a knowledge platform for human proteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

ConoServer: updated content, knowledge, and discovery tools in the conopeptide database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

MACiE: exploring the diversity of biochemical reactions

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The Histone Database: an integrated resource for histones and histone fold-containing proteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

A series of PDB related databases for everyday needs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

GPCRDB: information system for G protein-coupled receptors

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The EMBRACE web service collection

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

URL decay in MEDLINE--a 4-year follow-up study

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Gene ontology: tool for the unification of biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The tragedy of the commons. The population problem has no technical solution; it requires a fundamental extension in morality

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

CDD: NCBI's conserved domain database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The carbohydrate-active enzymes database (CAZy) in 2013

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Activities at the Universal Protein Resource (UniProt)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

EzCatDB: the enzyme reaction database, 2015 update.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

An approach to compare bio-ontologies portals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The PDB_REDO server for macromolecular structure model optimization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The Concise Guide to PHARMACOLOGY 2013/14: overview

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The Structure-Function Linkage Database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

RefSeq: an update on mammalian reference sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

The transporter classification database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Assembly information services in the European Nucleotide Archive

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

DDBJ progress report: a new submission system for leading to a correct annotation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

BLAST: a more efficient report with usability improvements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Data standardization and sharing-the work of the HUPO-PSI.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

TIGRFAMs and Genome Properties in 2013.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

PASS2 version 4: an update to the database of structure-based sequence alignments of structural domain superfamilies.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Resolution of controversies in drug/receptor interactions by protein structure. Limitations and pharmacological solutions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Identification and correction of abnormal, incomplete and mispredicted proteins in public databases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

CyBase: a database of cyclic protein sequences and structures, with applications in protein discovery and engineering

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

KinG: a database of protein kinases in genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

EXProt: a database for proteins with an experimentally verified function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

gpDB: a database of GPCRs, G-proteins, effectors and their interactions.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24803

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24803

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24803

21 January 2018

tragedy of the commons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4446195

Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25820941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The lysozyme mechanism sorted -- after 50 years

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25820941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.24803

1 reference

2587708

2587708

1 reference

1 reference

1 reference