Resolving deep relationships of PACMAD grasses: a phylogenomic approach (Q28647246)

7

object named as

Dustin Mayfield-Jones

0 references

Lynn G. Clark

3

object named as

Lynn G Clark

0 references

author name string

Joseph L Cotton

1

0 references

William P Wysocki

2

0 references

Scot A Kelchner

4

0 references

J Chris Pires

5

0 references

Patrick P Edger

6

0 references

Melvin R Duvall

Creative Commons Attribution 4.0 International

8

0 references

language of work or name

English

0 references

publication date

11 July 2015

0 references

published in

BMC Plant Biology

0 references

volume

15

0 references

issue

1

0 references

page(s)

178

0 references

copyright license

start time

11 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

BEAST 2: a software platform for Bayesian evolutionary analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Overcoming deep roots, fast rates, and short internodes to resolve the ancient rapid radiation of eupolypod II ferns

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

The Complete Chloroplast Genome of Coix lacryma-jobi and a Comparative Molecular Evolutionary Analysis of Plastomes in Cereals

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

ASAP: amplification, sequencing & annotation of plastomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Decoupled taxonomic radiation and ecological expansion of open-habitat grasses in the Cenozoic of North America

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

MAFFT version 5: improvement in accuracy of multiple sequence alignment

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Allopolyploidy, diversification, and the Miocene grassland expansion

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Molecular dating, evolutionary rates, and the age of the grasses.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Plastome sequences of two New World bamboos--Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)--extend phylogenomic understanding of Bambusoideae.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Phylogeny and a new tribal classification of the Panicoideae s.l. (Poaceae) based on plastid and nuclear sequence data and structural data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Mitochondrial genome recombination in the zone of contact between two hybridizing conifers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Sequence and comparative analysis of the maize NB mitochondrial genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498559

A Phylogeny of the Grass Family (Poaceae) Based on ndhF Sequence Data

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

Oligocene CO2 decline promoted C4 photosynthesis in grasses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

The phylogeny of the BEP clade in grasses revisited: evidence from the whole-genome sequences of chloroplasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

The closest relatives of cacti: insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

Proposal for an Expanded Distichlis (Poaceae, Chloridoideae): Support from Molecular, Morphological, and Anatomical Characters

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

The age of the grasses and clusters of origins of C4photosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

Cenozoic climate changes: A review based on time series analysis of marine benthic δ18O records

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0563-9

Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26160195

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12870-015-0563-9

1 reference

Dimensions Publication ID

1037906359

0 references

1 reference

1 reference

PubMed publication ID

26160195

1 reference