Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli (Q28647522)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25911659%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli (English)

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6 March 2020

0 references

1

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6 March 2020

Richard Lenski

series ordinal

2

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6 March 2020

3

Jeffrey E Barrick

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6 March 2020

language of work or name

English

0 references

publication date

24 April 2015

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6 March 2020

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6 March 2020

volume

200

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6 March 2020

issue

2

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6 March 2020

page(s)

619-631

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The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps

6 March 2020

cites work

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Genome dynamics during experimental evolution

17 March 2017

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Parallel evolutionary dynamics of adaptive diversification in Escherichia coli

17 March 2017

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Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

17 March 2017

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Genomic analysis of a key innovation in an experimental Escherichia coli population

17 March 2017

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Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli

17 March 2017

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Second-order selection for evolvability in a large Escherichia coli population

17 March 2017

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Genome evolution and adaptation in a long-term experiment with Escherichia coli

17 March 2017

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Genome-wide mutational diversity in an evolving population of Escherichia coli

17 March 2017

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Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

17 March 2017

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Beneficial mutation selection balance and the effect of linkage on positive selection

17 March 2017

1 reference

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Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli

17 March 2017

1 reference

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Long-term experimental evolution in Escherichia coli. XI. Rejection of non-transitive interactions as cause of declining rate of adaptation

17 March 2017

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Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations

17 March 2017

1 reference

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17 March 2017

Selection in chemostats

1 reference

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Quantitative evolutionary dynamics using high-resolution lineage tracking

17 March 2017

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Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq

3 June 2018

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Simple phenotypic sweeps hide complex genetic changes in populations

3 June 2018

1 reference

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Rate of adaptation in sexuals and asexuals: a solvable model of the Fisher-Muller effect

3 June 2018

1 reference

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Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

3 June 2018

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Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus

3 June 2018

1 reference

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Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli

3 June 2018

1 reference

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Emergent neutrality in adaptive asexual evolution

3 June 2018

1 reference

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Genetic variation and the fate of beneficial mutations in asexual populations

3 June 2018

1 reference

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Cell cycle synchronization of Escherichia coli using the stringent response, with fluorescence labeling assays for DNA content and replication.

3 June 2018

1 reference

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Death and cannibalism in a seasonal environment facilitate bacterial coexistence

3 June 2018

1 reference

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A systematics for discovering the fundamental units of bacterial diversity

3 June 2018

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Towards a conceptual and operational union of bacterial systematics, ecology, and evolution

3 June 2018

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Tests of parallel molecular evolution in a long-term experiment with Escherichia coli

3 June 2018

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Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli

3 June 2018

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Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection

3 June 2018

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Periodic selection in Escherichia coli

3 June 2018

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Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

3 June 2018

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What are bacterial species?

3 June 2018

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Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

3 June 2018

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Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements

3 June 2018

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Long-Term Experimental Evolution in Escherichia coli. VIII. Dynamics of a Balanced Polymorphism

3 June 2018

2 references

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3 June 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

Evolution of high mutation rates in experimental populations of E. coli

27 November 2018

1 reference

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Adaptive evolution of highly mutable loci in pathogenic bacteria

3 June 2018

1 reference

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Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli.

27 November 2018

1 reference

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Long-term dynamics of adaptation in asexual populations

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

Negative epistasis between beneficial mutations in an evolving bacterial population

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

An equivalence principle for the incorporation of favorable mutations in asexual populations.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

The fate of competing beneficial mutations in an asexual population.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492384

LONG-TERM EXPERIMENTAL EVOLUTION IN ESCHERICHIA COLI. VII. MECHANISMS MAINTAINING GENETIC VARIABILITY WITHIN POPULATIONS.

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25911659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolution of competitive fitness in experimental populations of E. coli: what makes one genotype a better competitor than another?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25911659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1534/GENETICS.115.176677

2 references

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6 March 2020

1 reference

2 references

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6 March 2020

PubMed publication ID

25911659

2 references