Partial uracil-DNA-glycosylase treatment for screening of ancient DNA (Q28649330)

2

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Susanne Nordenfelt

4

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Swapan Mallick

3

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David Reich

Philosophical Transactions of the Royal Society B

5

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language of work or name

English

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publication date

19 January 2015

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published in

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volume

370

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issue

1660

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page(s)

20130624

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cites work

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17 March 2017

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Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

17 March 2017

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Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

17 March 2017

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17 March 2017

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DNA analysis of an early modern human from Tianyuan Cave, China

17 March 2017

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The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

17 March 2017

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A high-coverage genome sequence from an archaic Denisovan individual

17 March 2017

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A "Copernican" reassessment of the human mitochondrial DNA tree from its root

17 March 2017

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Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death

17 March 2017

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Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources

17 March 2017

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Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA

17 March 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

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Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

17 March 2017

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Patterns of damage in genomic DNA sequences from a Neandertal

17 March 2017

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Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification

17 March 2017

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BEDTools: a flexible suite of utilities for comparing genomic features

17 March 2017

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Ancient DNA: do it right or not at all

7 April 2017

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Illumina sequencing library preparation for highly multiplexed target capture and sequencing

7 April 2017

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Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

7 April 2017

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DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA

7 April 2017

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Genome-wide in situ exon capture for selective resequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Ancient whole genome enrichment using baits built from modern DNA.

9 May 2017

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A paleogenomic perspective on evolution and gene function: new insights from ancient DNA.

3 June 2018

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Quantitative PCR as a predictor of aligned ancient DNA read counts following targeted enrichment

3 June 2018

1 reference

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A mitochondrial genome sequence of a hominin from Sima de los Huesos

3 June 2018

1 reference

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Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Case study: enrichment of ancient mitochondrial DNA by hybridization capture

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Setting the stage - building and working in an ancient DNA laboratory.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Identification of genetic variants using bar-coded multiplexed sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275898

Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase

3 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25487342

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSTB.2013.0624

1 reference

4417422

4417422

1 reference

1 reference

1 reference