RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus (Q28649354)

7

0 references

John van der Oost

21

John van der Oost

0 references

David W Taylor

David W Taylor

3

0 references

Akeo Shinkai

Akeo Shinkai

20

0 references

Peter J. Schaap

Peter J Schaap

15

0 references

Shigeyuki Yokoyama

Shigeyuki Yokoyama

14

0 references

Eva Nogales

18

Eva Nogales

0 references

Arjan Barendregt

6

Arjan Barendregt

0 references

Henning Urlaub

16

Henning Urlaub

0 references

author name string

Raymond H J Staals

1

0 references

Yifan Zhu

2

0 references

Jack E Kornfeld

4

0 references

Kundan Sharma

5

0 references

Marnix Vlot

8

0 references

Nirajan Neupane

9

0 references

Koen Varossieau

10

0 references

Keiko Sakamoto

11

0 references

Takehiro Suzuki

12

0 references

Naoshi Dohmae

13

0 references

Albert J R Heck

Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli

17

0 references

language of work or name

English

0 references

publication date

20 November 2014

0 references

published in

Molecular Cell

0 references

volume

56

0 references

issue

4

0 references

page(s)

518-30

0 references

cites work

1 reference

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Structure and RNA-binding properties of the Type III-A CRISPR-associated protein Csm3

17 March 2017

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Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases

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Molecular mechanisms of CRISPR-mediated microbial immunity

17 March 2017

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CRISPR interference: a structural perspective

17 March 2017

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CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein

17 March 2017

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Crystal structure and nucleic acid-binding activity of the CRISPR-associated protein Csx1 of Pyrococcus furiosus

17 March 2017

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A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

17 March 2017

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Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral Immunity

17 March 2017

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CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

17 March 2017

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Protein structure prediction on the Web: a case study using the Phyre server

17 March 2017

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Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes

17 March 2017

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Small CRISPR RNAs guide antiviral defense in prokaryotes

17 March 2017

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The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

17 March 2017

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

17 March 2017

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A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

17 March 2017

1 reference

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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

17 March 2017

1 reference

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Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

17 March 2017

1 reference

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Evolution and classification of the CRISPR-Cas systems

7 April 2017

1 reference

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RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

7 April 2017

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Appion: an integrated, database-driven pipeline to facilitate EM image processing

7 April 2017

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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

7 April 2017

1 reference

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CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

7 April 2017

1 reference

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Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting

9 May 2017

1 reference

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Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins.

3 June 2018

1 reference

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Structural biology. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target

3 June 2018

1 reference

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Structural biology. Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli

3 June 2018

1 reference

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Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system

3 June 2018

1 reference

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Unravelling the structural and mechanistic basis of CRISPR-Cas systems

3 June 2018

1 reference

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The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus

3 June 2018

1 reference

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Cas6 specificity and CRISPR RNA loading in a complex CRISPR-Cas system

3 June 2018

1 reference

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Degenerate target sites mediate rapid primed CRISPR adaptation.

3 June 2018

1 reference

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CRISPR-based technologies: prokaryotic defense weapons repurposed

3 June 2018

1 reference

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A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii

3 June 2018

1 reference

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Genetic characterization of antiplasmid immunity through a type III-A CRISPR-Cas system

3 June 2018

1 reference

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Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Structure of an RNA silencing complex of the CRISPR-Cas immune system.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Structure of the CRISPR interference complex CSM reveals key similarities with cascade

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Type I-E CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Structures of the RNA-guided surveillance complex from a bacterial immune system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Structural basis for CRISPR RNA-guided DNA recognition by Cascade

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Self versus non-self discrimination during CRISPR RNA-directed immunity.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Fully automated, sequential tilt-series acquisition with Leginon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Investigation of protein–RNA interactions by mass spectrometry—Techniques and applications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

Transcription profile of Thermus thermophilus CRISPR systems after phage infection.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342149

10.1016/J.MOLCEL.2014.10.005

27 November 2018

Identifiers

DOI

1 reference

1 reference

1 reference

PubMed publication ID

25457165

1 reference