Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions (Q28659001)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24399481%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Blaise Li

2

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13 June 2020

Peter G Foster

3

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13 June 2020

Martin Embley

4

1 reference

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13 June 2020

Peter Civáň

5

1 reference

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13 June 2020

4

T Martin Embley

0 references

author name string

Peter G Foster

3

0 references

Peter Civán

5

0 references

language of work or name

English

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publication date

March 2014

0 references

published in

Systematic Biology

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13 June 2020

volume

63

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13 June 2020

page(s)

272-279

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13 June 2020

issue

2

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Creative Commons Attribution-NonCommercial 3.0 Unported

13 June 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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17 March 2017

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Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods

17 March 2017

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Establishing a time-scale for plant evolution

17 March 2017

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17 March 2017

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Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages

17 March 2017

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Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

17 March 2017

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Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny

17 March 2017

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The deepest divergences in land plants inferred from phylogenomic evidence

17 March 2017

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

17 March 2017

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Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

17 March 2017

1 reference

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Fragments of the earliest land plants

17 March 2017

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

17 March 2017

1 reference

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The function of genomes in bioenergetic organelles

17 March 2017

1 reference

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A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

17 March 2017

1 reference

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The closest living relatives of land plants

17 March 2017

1 reference

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Walkabout on the long branches of plant evolution

7 April 2017

1 reference

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Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study

20 June 2018

1 reference

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Molecular data from 27 proteins do not support a Precambrian origin of land plants

20 June 2018

1 reference

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Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set.

20 June 2018

1 reference

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BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

20 June 2018

1 reference

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Forces that influence the evolution of codon bias

20 June 2018

1 reference

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Presence of three mycorrhizal genes in the common ancestor of land plants suggests a key role of mycorrhizas in the colonization of land by plants.

20 June 2018

1 reference

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A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

20 June 2018

1 reference

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Charophyte algae and land plant origins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3926305

Modeling compositional heterogeneity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3926305

Chloroplast phylogeny indicates that bryophytes are monophyletic

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3926305

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

20 June 2018

1 reference

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Molecular phylogenetic analysis among bryophytes and tracheophytes based on combined data of plastid coded genes and the 18S rRNA gene

20 June 2018

1 reference

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GCUA: general codon usage analysis

20 June 2018

1 reference

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Directional mutation pressure and neutral molecular evolution

20 June 2018

1 reference

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Substitutional bias confounds inference of cyanelle origins from sequence data

20 June 2018

1 reference

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A 20-state empirical amino-acid substitution model for green plant chloroplasts.

20 June 2018

1 reference

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Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

27 November 2018

1 reference

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Profiling phylogenetic informativeness

27 November 2018

1 reference

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Green genes-comparative genomics of the green branch of life.

27 November 2018

1 reference

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Computing Bayes factors using thermodynamic integration.

27 November 2018

1 reference

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A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3926305

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3926305

Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24399481

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/SYSBIO/SYT109

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24399481%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24399481%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24399481%20AND%20SRC:MED&resulttype=core&format=json