Evolution of the class IV HD-zip gene family in streptophytes (Q28680753)

5

object named as

Dennis W Stevenson

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author name string

Christopher S Zalewski

1

0 references

Sandra K Floyd

2

0 references

Chihiro Furumizu

3

0 references

Keiko Sakakibara

Molecular Biology and Evolution

4

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language of work or name

English

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publication date

October 2013

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published in

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volume

30

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issue

10

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page(s)

2347-65

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cites work

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17 March 2017

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Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences

17 March 2017

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The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

17 March 2017

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Origin of land plants: do conjugating green algae hold the key?

17 March 2017

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Sequence and function of basic helix-loop-helix proteins required for stomatal development in Arabidopsis are deeply conserved in land plants

17 March 2017

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Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

17 March 2017

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A comprehensive classification and evolutionary analysis of plant homeobox genes

17 March 2017

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The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

17 March 2017

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Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs

17 March 2017

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The deepest divergences in land plants inferred from phylogenomic evidence

17 March 2017

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

17 March 2017

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Evolution of class III homeodomain-leucine zipper genes in streptophytes

17 March 2017

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ProtTest: selection of best-fit models of protein evolution

17 March 2017

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ASRP: the Arabidopsis Small RNA Project Database

17 March 2017

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START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors

17 March 2017

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WebLogo: A Sequence Logo Generator

17 March 2017

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The origin of new genes: glimpses from the young and old

17 March 2017

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Empirical analysis of transcriptional activity in the Arabidopsis genome

17 March 2017

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Mfold web server for nucleic acid folding and hybridization prediction

17 March 2017

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Metabolite-binding RNA domains are present in the genes of eukaryotes

17 March 2017

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MRBAYES: Bayesian inference of phylogenetic trees

17 March 2017

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The origin of plants: body plan changes contributing to a major evolutionary radiation

17 March 2017

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START: a lipid-binding domain in StAR, HD-ZIP and signalling proteins

17 March 2017

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Preservation of duplicate genes by complementary, degenerative mutations

17 March 2017

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Efficient gene targeting in the moss Physcomitrella patens

17 March 2017

1 reference

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Sequence logos: a new way to display consensus sequences

17 March 2017

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More than just orphans: are taxonomically-restricted genes important in evolution?

17 March 2017

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Bayesian inference of phylogeny and its impact on evolutionary biology

6 April 2017

1 reference

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Ancestral polyploidy in seed plants and angiosperms

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

A gene expression map of Arabidopsis thaliana development

7 April 2017

1 reference

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Gene regulation by riboswitches

7 April 2017

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The closest living relatives of land plants

7 April 2017

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Arabidopsis homeodomain-leucine zipper IV proteins promote stomatal development and ectopically induce stomata beyond the epidermis

7 April 2017

1 reference

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Translational control in cellular and developmental processes

3 June 2018

1 reference

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Molecular phylogenetics: principles and practice

3 June 2018

1 reference

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Genome-wide identification, evolutionary expansion, and expression profile of homeodomain-leucine zipper gene family in poplar (Populus trichocarpa).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Birth, death and subfunctionalization in the Arabidopsis genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Systematic analysis of sequences and expression patterns of drought-responsive members of the HD-Zip gene family in maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Bryophyte diversity and evolution: windows into the early evolution of land plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana.

3 June 2018

1 reference

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Epidermis: the formation and functions of a fundamental plant tissue.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor Outer Cell Layer1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Mechanisms and evolution of genomic imprinting in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Genome-wide demethylation of Arabidopsis endosperm.

3 June 2018

1 reference

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Extensive demethylation of repetitive elements during seed development underlies gene imprinting

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development

3 June 2018

1 reference

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The true story of the HD-Zip family

3 June 2018

1 reference

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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Transcriptional regulation of epidermal cell fate in the Arabidopsis embryo

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Genome duplication and the origin of angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Orphans as taxonomically restricted and ecologically important genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Mechanisms of translational control by the 3' UTR in development and differentiation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Computational prediction of miRNAs in Arabidopsis thaliana

3 June 2018

1 reference

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3 June 2018

Eukaryotic intron loss

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A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

3 June 2018

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Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis

3 June 2018

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The evolutionary analysis of "orphans" from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes

3 June 2018

1 reference

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Regulatory functions of 3'UTRs.

3 June 2018

1 reference

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Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Expression patterns of genes encoding HD-ZipIV homeo domain proteins define specific domains in maize embryos and meristems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis

3 June 2018

1 reference

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The Arabidopsis thaliana MERISTEM LAYER 1 promoter specifies epidermal expression in meristems and young primordia

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Finding families for genomic ORFans

3 June 2018

1 reference

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ZmOCL1, an HDGL2 family homeobox gene, is expressed in the outer cell layer throughout maize development.

3 June 2018

1 reference

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Homeoboxes in plant development.

3 June 2018

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Identification of a meristem L1 layer-specific gene in Arabidopsis that is expressed during embryonic pattern formation and defines a new class of homeobox genes

3 June 2018

1 reference

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Ovule development: identification of stage-specific and tissue-specific cDNAs

3 June 2018

1 reference

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A role for reverse transcripts in gene conversion

3 June 2018

1 reference

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The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Retroviruses and retrotransposons: the role of reverse transcription in shaping the eukaryotic genome

3 June 2018

1 reference

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A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif

3 June 2018

1 reference

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HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

ATML1 promotes epidermal cell differentiation in Arabidopsis shoots

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

27 November 2018

1 reference

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Origin of land plants revisited in the light of sequence contamination and missing data

27 November 2018

1 reference

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Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato

27 November 2018

1 reference

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CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

Lowly expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation

27 November 2018

1 reference

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Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae).

27 November 2018

1 reference

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Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus.

27 November 2018

1 reference

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Termination of asymmetric cell division and differentiation of stomata

27 November 2018

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Evolution of the class III HD-Zip gene family in land plants

27 November 2018

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MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins.

27 November 2018

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The molecular characterization of PaHB2, a homeobox gene of the HD-GL2 family expressed during embryo development in Norway spruce

27 November 2018

1 reference

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Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis

27 November 2018

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Isolation of homeodomain-leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain-leucine zipper genes in land plants

27 November 2018

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The origins of genomic duplications in Arabidopsis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

The Arabidopsis Athb-10 (GLABRA2) is an HD-Zip protein required for regulation of root hair development

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3773374

27 November 2018

Pseudogenes in yeast?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23894141

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23894141

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PaHB1 is an evolutionary conserved HD-GL2 homeobox gene expressed in the protoderm during Norway spruce embryo development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23894141

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The origin and early evolution of plants on land

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/37918

15 July 2023

Identifiers

DOI

10.1093/MOLBEV/MST132

1 reference

1 reference

1 reference

PubMed publication ID

23894141

1 reference