YM500: a small RNA sequencing (smRNA-seq) database for microRNA research (Q28710187)

2

0 references

Tse-Shun Huang

3

0 references

Shih-Ting Chang

4

0 references

Hsing-Jen Sun

5

0 references

Cheng-Fong Tsai

6

0 references

Muh-Lii Liang

7

0 references

Tai-Tong Wong

8

0 references

Hsei-Wei Wang

Creative Commons Attribution-NonCommercial 3.0 Unported

9

0 references

language of work or name

English

0 references

publication date

January 2013

0 references

published in

Nucleic Acids Research

0 references

volume

41

0 references

issue

Database issue

0 references

page(s)

D285-94

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copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes

17 March 2017

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Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

17 March 2017

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Real-time quantification of microRNAs by stem-loop RT-PCR

17 March 2017

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17 March 2017

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6 April 2017

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Redirection of silencing targets by adenosine-to-inosine editing of miRNAs

7 April 2017

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MicroRNAs from the same precursor have different targeting properties

7 April 2017

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3 June 2018

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A-to-I editing of microRNAs in the mammalian brain increases during development.

3 June 2018

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Diagnostic role of microRNA expression profile in the serum of pregnant women with fetuses with neural tube defects

3 June 2018

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Extent, causes, and consequences of small RNA expression variation in human adipose tissue

3 June 2018

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Distinct MicroRNA Subcellular Size and Expression Patterns in Human Cancer Cells.

3 June 2018

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Systematic identification of edited microRNAs in the human brain

3 June 2018

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3 June 2018

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miRNA arm selection and isomiR distribution in gastric cancer

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis

3 June 2018

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Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs.

3 June 2018

1 reference

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3 June 2018

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pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns

3 June 2018

1 reference

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The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1.

3 June 2018

1 reference

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The exoribonuclease Nibbler controls 3' end processing of microRNAs in Drosophila.

3 June 2018

1 reference

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Interrogation of rabbit miRNAs and their isomiRs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Deep sequencing of microRNA precursors reveals extensive 3' end modification

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Complexity of the microRNA repertoire revealed by next-generation sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

mirTools: microRNA profiling and discovery based on high-throughput sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

DSAP: deep-sequencing small RNA analysis pipeline

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Identification and characterization of novel amphioxus microRNAs by Solexa sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

RNA editing of human microRNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531161

miRNAkey: a software for microRNA deep sequencing analysis.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1238

The rectal cancer microRNAome--microRNA expression in rectal cancer and matched normal mucosa.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1238

Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23203880

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS1238

1 reference

journals/nar/ChengCHCSTLWW13

715788

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

715788

1 reference

1 reference

1 reference