Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR (Q28711491)

Eva Huala

12

0 references

Paul W. Sternberg

13

Paul W Sternberg

0 references

Kimberly Van Auken

1

Kimberly Van Auken

0 references

Petra Fey

2

Petra Fey

0 references

Laurel Cooper

5

Laurel Cooper

0 references

Rex L. Chisholm

11

Rex Chisholm

0 references

author name string

Robert Dodson

4

0 references

Donghui Li

6

0 references

Juancarlos Chan

7

0 references

Yuling Li

8

0 references

Siddhartha Basu

9

0 references

Hans-Michael Muller

Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach

10

0 references

language of work or name

English

0 references

publication date

2012

0 references

published in

Database

0 references

volume

2012

0 references

issue

0

0 references

page(s)

bas040

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Text mining for the biocuration workflow

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

The Sequence Ontology: a tool for the unification of genome annotations

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Textpresso: an ontology-based information retrieval and extraction system for biological literature

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Directly e-mailing authors of newly published papers encourages community curation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Automatic categorization of diverse experimental information in the bioscience literature

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

The Gene Ontology: enhancements for 2011

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Disease Ontology: a backbone for disease semantic integration

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

WormBase 2012: more genomes, more data, new website

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

A database for chemical proteomics: ChEBI.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Toward an interactive article: integrating journals and biological databases.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Building a cell and anatomy ontology of Caenorhabditis elegans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

Manual curation is not sufficient for annotation of genomic databases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

WormBook: the online review of Caenorhabditis elegans biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500519

3 June 2018

Identifiers

DOI

10.1093/DATABASE/BAS040

1 reference

1 reference

1 reference

PubMed publication ID

23160413

1 reference