The role of Transposable Elements in shaping the combinatorial interaction of Transcription Factors (Q28715946)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22897927%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

The role of Transposable Elements in shaping the combinatorial interaction of Transcription Factors (English)

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11 February 2020

3

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11 February 2020

Olivier Friard

4

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11 February 2020

Michele Caselle

7

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11 February 2020

author name string

Alessandro Testori

1

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11 February 2020

Livia Caizzi

2

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11 February 2020

Michele De Bortoli

5

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11 February 2020

Davide Cora'

6

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11 February 2020

language of work or name

English

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publication date

16 August 2012

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11 February 2020

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11 February 2020

volume

13

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11 February 2020

issue

1

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page(s)

400

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Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

11 February 2020

cites work

1 reference

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Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

17 March 2017

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17 March 2017

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Estrogen receptor alpha controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs

17 March 2017

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Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer

17 March 2017

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Exaptation of an ancient Alu short interspersed element provides a highly conserved vitamin D-mediated innate immune response in humans and primates

17 March 2017

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17 March 2017

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Differential estradiol and selective estrogen receptor modulator (SERM) regulation of Keratin 13 gene expression and its underlying mechanism in breast cancer cells

17 March 2017

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FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

17 March 2017

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Demographic histories of ERV-K in humans, chimpanzees and rhesus monkeys

17 March 2017

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Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene

17 March 2017

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Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

17 March 2017

1 reference

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Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

17 March 2017

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Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns

17 March 2017

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A large family of ancient repeat elements in the human genome is under strong selection

17 March 2017

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From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response

17 March 2017

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Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

17 March 2017

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17 March 2017

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Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era

17 March 2017

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

17 March 2017

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The regulated retrotransposon transcriptome of mammalian cells

7 April 2017

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Genome-wide analysis of estrogen receptor binding sites

7 April 2017

1 reference

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A distal enhancer and an ultraconserved exon are derived from a novel retroposon

7 April 2017

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Interspersed repeats and other mementos of transposable elements in mammalian genomes

7 April 2017

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Origin of a substantial fraction of human regulatory sequences from transposable elements

7 April 2017

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Prediction of transposable element derived enhancers using chromatin modification profiles

7 April 2017

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Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.

3 June 2018

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ERα phenotype, estrogen level, and benzo[a]pyrene exposure modulate tumor growth and metabolism of lung adenocarcinoma cells

3 June 2018

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Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements.

3 June 2018

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Inferring transcription factor complexes from ChIP-seq data

3 June 2018

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Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

3 June 2018

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Origin and evolution of the ligand-binding ability of nuclear receptors

3 June 2018

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MER41 repeat sequences contain inducible STAT1 binding sites

3 June 2018

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Relationships between hypoxia markers and the leptin system, estrogen receptors in human primary and metastatic breast cancer: effects of preoperative chemotherapy.

3 June 2018

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Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species

3 June 2018

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Transcriptional rewiring of the sex determining dmrt1 gene duplicate by transposable elements

3 June 2018

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Transposable elements in gene regulation and in the evolution of vertebrate genomes

3 June 2018

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Proteome analysis and genome-wide regulatory motif prediction identify novel potentially sex-hormone regulated proteins in rat efferent ducts.

3 June 2018

1 reference

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Different gene regulation strategies revealed by analysis of binding motifs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

A c-Myc regulatory subnetwork from human transposable element sequences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Endogenous retroviral LTRs as promoters for human genes: a critical assessment.

3 June 2018

1 reference

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Estradiol-induced regression in T47D:A18/PKCalpha tumors requires the estrogen receptor and interaction with the extracellular matrix

3 June 2018

1 reference

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Dual expression of alpha-tocopherol-associated protein and estrogen receptor in normal/benign human breast luminal cells and the downregulation of alpha-tocopherol-associated protein in estrogen-receptor-positive breast carcinomas

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Regulation of facilitative glucose transporters and AKT/MAPK/PRKAA signaling via estradiol and progesterone in the mouse uterine epithelium

3 June 2018

1 reference

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17beta-estradiol suppresses cytotoxicity and proliferative capacity of murine splenic NK1.1+ cells

3 June 2018

1 reference

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Evolution of the mammalian transcription factor binding repertoire via transposable elements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Possible involvement of SINEs in mammalian-specific brain formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.

3 June 2018

1 reference

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Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Evidence for a stem cell hierarchy in the adult human breast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution

3 June 2018

1 reference

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Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Tempo and mode of ERV-K evolution in human and chimpanzee genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Human endogenous retroviruses in the primate lineage and their influence on host genomes

3 June 2018

1 reference

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Transposable elements donate lineage-specific regulatory sequences to host genomes

3 June 2018

1 reference

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Nuclear receptors: the evolution of diversity

3 June 2018

1 reference

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Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

PDZK1 and GREB1 are estrogen-regulated genes expressed in hormone-responsive breast cancer.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478180

Transposable elements have rewired the core regulatory network of human embryonic stem cells

3 June 2018

1 reference

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Evolution of promoter affinity for transcription factors in the human lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-400

Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer

21 January 2018

1 reference

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Analysis of estrogen receptor alpha-Sp1 interactions in breast cancer cells by fluorescence resonance energy transfer

21 January 2018

1 reference

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Association of CYP1B1 gene polymorphisms and the positive expression of estrogen alpha and estrogen beta with endometrial cancer risk

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22897927

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transposable elements as a significant source of transcription regulating signals

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22897927

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-400

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22897927%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

11 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-400

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22897927%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

22897927

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22897927%20AND%20SRC:MED&resulttype=core&format=json