Routine use of microbial whole genome sequencing in diagnostic and public health microbiology (Q28728617)

Claudio U Köser

1

0 references

Stephen H Gillespie

Stephen H Gillespie

4

0 references

Julian Parkhill

Julian Parkhill

10

0 references

Sharon Peacock

11

Sharon J Peacock

0 references

Stephen D Bentley

9

Stephen D Bentley

0 references

Matthew J Ellington

2

Matthew J Ellington

0 references

Mark Farrington

6

Mark Farrington

0 references

Matthew Holden

7

Matthew T G Holden

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author name string

Edward J P Cartwright

3

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Nicholas M Brown

Creative Commons Attribution 4.0 International

5

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language of work or name

English

0 references

publication date

2 August 2012

7 references

23 March 2019

2 August 2019

19 September 2019

2 November 2019

29 May 2020

2 September 2020

26 September 2020

7 references

23 March 2019

2 August 2019

19 September 2019

2 November 2019

29 May 2020

2 September 2020

26 September 2020

8

0 references

issue

8

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page(s)

e1002824

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copyright license

7 references

23 March 2019

2 August 2019

19 September 2019

2 November 2019

29 May 2020

2 September 2020

on focus list of Wikimedia project

26 September 2020

copyright status

copyrighted

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ScienceSource

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cites work

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.

20 June 2018

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Impact of Fgd1 and ddn diversity in Mycobacterium tuberculosis complex on in vitro susceptibility to PA-824.

20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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Concordance between two phenotypic assays and ultradeep pyrosequencing for determining HIV-1 tropism

20 June 2018

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20 June 2018

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20 June 2018

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Charting a course for genomic medicine from base pairs to bedside

20 June 2018

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Next-generation sequencing of Coccidioides immitis isolated during cluster investigation

20 June 2018

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Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients

20 June 2018

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20 June 2018

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Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

20 June 2018

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Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing

20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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Improved detection of mutated human cytomegalovirus UL97 by pyrosequencing

20 June 2018

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20 June 2018

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20 June 2018

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Translational medicine policy issues in infectious disease

20 June 2018

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Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory

20 June 2018

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20 June 2018

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Decline of EMRSA-16 amongst methicillin-resistant Staphylococcus aureus causing bacteraemias in the UK between 2001 and 2007.

20 June 2018

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Population mobility, globalization, and antimicrobial drug resistance

20 June 2018

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The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale

20 June 2018

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Genomics. Genome project standards in a new era of sequencing

20 June 2018

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Spoligotyping for molecular epidemiology of the Mycobacterium tuberculosis complex

20 June 2018

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Application of 'next-generation' sequencing technologies to microbial genetics

20 June 2018

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Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing

20 June 2018

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Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

20 June 2018

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Importance of improved TB diagnostics in addressing the extensively drug-resistant TB crisis

20 June 2018

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20 June 2018

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Bacterial genome sequencing and its use in infectious diseases

20 June 2018

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20 June 2018

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Rationale and uses of a public HIV drug-resistance database

20 June 2018

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Performance characteristics of the TRUGENE HIV-1 Genotyping Kit and the Opengene DNA Sequencing System

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Oxford Nanopore announcement sets sequencing sector abuzz.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A Streptococcus

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Epidemiology. Outbreak detectives embrace the genome era.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Present and future automation in bacteriology

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Identification of a salmonellosis outbreak by means of molecular sequencing.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Genomics. The genomic view of bacterial diversification

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Multiple personal genomes await

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Influenza: making privileged data public.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Genotyping of Mycobacterium tuberculosis clinical isolates using IS6110-based restriction fragment length polymorphism analysis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

XDR-TB genome sequencing: a glimpse of the microbiology of the future

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

The impact of next-generation sequencing technology on genetics

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410874

Rapid MRSA test in exposed persons: costs and savings in hospitals

27 November 2018

1 reference

12 December 2020

Sequencing of superbugs seen as key to combating their spread

1 reference

12 December 2020

European harmonization of MIC breakpoints for antimicrobial susceptibility testing of bacteria

1 reference

12 December 2020

Molecular epidemiology of human pathogens: how to translate breakthroughs into public health practice, Stockholm, November 2011

1 reference

12 December 2020

1 reference

12 December 2020

10.1371/JOURNAL.PPAT.1002824

Identifiers

DOI

1 reference

1 reference

1 reference

PubMed publication ID

22876174

1 reference