Best practices for justifying fossil calibrations (Q28732089)

Jessica M Theodor

23

0 references

Jun G Inoue

Jun G Inoue

7

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Johannes Müller

Johannes Müller

21

0 references

Michael J. Benton

Michael J Benton

25

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Philip Donoghue

Philip C J Donoghue

2

0 references

Christy Anna Hipsley

18

Christy A Hipsley

0 references

Daniel T. Ksepka

10

Daniel T Ksepka

0 references

Kenneth D. Angielczyk

16

Kenneth D Angielczyk

0 references

Louis L. Jacobs

Louis Jacobs

19

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Patricia A Holroyd

Patricia A Holroyd

6

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author name string

James F Parham

1

0 references

Christopher J Bell

3

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Tyler D Calway

4

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Randall B Irmis

8

0 references

Walter G Joyce

9

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José S L Patané

11

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Nathan D Smith

12

0 references

James E Tarver

13

0 references

Marcel van Tuinen

14

0 references

Ziheng Yang

15

0 references

Jenny M Greenwood

17

0 references

Peter J Makovicky

20

0 references

Krister T Smith

22

0 references

Rachel C M Warnock

Creative Commons Attribution-NonCommercial 3.0 Unported

24

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language of work or name

English

0 references

publication date

March 2012

0 references

published in

Systematic Biology

0 references

volume

61

0 references

issue

2

0 references

page(s)

346-59

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copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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17 March 2017

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A new time-scale for ray-finned fish evolution

17 March 2017

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Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome

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Extreme convergence in the body plans of an early suchian (Archosauria) and ornithomimid dinosaurs (Theropoda)

17 March 2017

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A Late Jurassic digging mammal and early mammalian diversification

17 March 2017

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Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins

17 March 2017

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Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection

17 March 2017

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Error in estimation of rate and time inferred from the early amniote fossil record and avian molecular clocks

17 March 2017

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17 March 2017

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Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds

17 March 2017

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Integrated fossil and molecular data reconstruct bat echolocation

17 March 2017

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Complete mitochondrial genome suggests diapsid affinities of turtles

17 March 2017

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Fossil Evidence for a Late Cretaceous Origin of "Hoofed" Mammals

17 March 2017

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7 April 2017

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7 April 2017

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Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision

7 April 2017

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Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1

7 April 2017

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Rocks and clocks: calibrating the Tree of Life using fossils and molecules

7 April 2017

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Multiple genome alignments facilitate development of NPCL markers: a case study of tetrapod phylogeny focusing on the position of turtles.

7 April 2017

1 reference

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Old taxa on young islands: a critique of the use of island age to date island-endemic clades and calibrate phylogenies

3 June 2018

1 reference

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Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

3 June 2018

1 reference

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Phylogeny and divergence times of filesnakes (Acrochordus): inferences from morphology, fossils and three molecular loci

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Distinguishing heat from light in debate over controversial fossils

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Mitochondrial genomes from major lizard families suggest their phylogenetic relationships and ancient radiations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock

3 June 2018

1 reference

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Empirical problems of the hierarchical likelihood ratio test for model selection

3 June 2018

1 reference

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Stem Lagomorpha and the antiquity of Glires

3 June 2018

1 reference

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Studying the effect of environmental change on biotic evolution: past genetic contributions, current work and future directions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Ecosystem remodelling among vertebrates at the Permian-Triassic boundary in Russia

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Age and timing of the Permian mass extinctions: U/Pb dating of closed-system zircons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Precision of molecular time estimates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome

3 June 2018

1 reference

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3 June 2018

Dating the tree of life

1 reference

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Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis

3 June 2018

1 reference

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Late Cretaceous relatives of rabbits, rodents, and other extant eutherian mammals.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Molecular evidence for a clade of turtles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Molecular clock calibrations and metazoan divergence dates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: statistical evidence for archosaurian affinity of turtles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

A molecular phylogeny of reptiles

3 June 2018

1 reference

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The fossil record and estimating divergence times between lineages: maximum divergence times and the importance of reliable phylogenies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Astronomical climate control on paleosol stacking patterns in the upper Paleocene–lower Eocene Willwood Formation, Bighorn Basin, Wyoming

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Proopiomelanocortin (POMC) and testing the phylogenetic position of turtles (Testudines)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Taxonomic revison of the basal neornithischian taxaThescelosaurusandBugenasaura

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Phylogenetic Relationships and Divergence Timing ofCrocodylusBased on Morphology and the Fossil Record

21 January 2018

1 reference

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Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation

21 January 2018

1 reference

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The earliest record of birch mice from the Early Miocene Nei Mongol, China.

21 January 2018

1 reference

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Triassic palynology of central and northwestern Europe: a review of palynofloral diversity patterns and biostratigraphic subdivisions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Behavioral and faunal implications of Early Cretaceous deinonychosaur trackways from China.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Synchronous palynofloristic extinction and recovery after the end-Permian event in the Prince Charles Mountains, Antarctica: Implications for palynofloristic turnover across Gondwana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Osteology of the Middle Triassic pseudosuchian archosaurArizonasaurus babbitti

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

The Anatomy of Effigia okeeffeae (Archosauria, Suchia), Theropod-like Convergence, and the Distribution of Related Taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Impact of increased character sampling on the phylogeny of Cetartiodactyla (Mammalia): combined analysis including fossils

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

A likelihood method for assessing molecular divergence time estimates and the placement of fossil calibrations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

A Geographical Information System (GIS) study of Triassic vertebrate biochronology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Utility and validity of Middle and Late Triassic ‘land vertebrate faunachrons’

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Molecular timescales and the fossil record: a paleontological perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

The comparative method for evaluating fossil calibration dates: a reply to Hedges and Kumar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Non-random decay of chordate characters causes bias in fossil interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Anatomy and affinities of large archosauromorphs from the lower Fremouw Formation (Early Triassic) of Antarctica

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Calibration and error in placental molecular clocks: a conservative approach using the cetartiodactyl fossil record

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Recovery of vegetation from the terminal Permian mass extinction in North China

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

A revision ofPoposaurus gracilis (Archosauria: Suchia) based on two new specimens from the Late Triassic of the southwestern U.S.A

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

The species taxonomy of the sauropodomorph dinosaurs from the Lowenstein Formation (Norian, Late Triassic) of Germany

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

The Triassic timescale: new constraints and a review of geochronological data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Latest on the absolute age of the Paleocene–Eocene Thermal Maximum (PETM): New insights from exact stratigraphic position of key ash layers +19 and −17

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

A new fossil fern assignable to Gleicheniaceae from Late Cretaceous sediments of New Jersey.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Playing chicken (Gallus gallus): methodological inconsistencies of molecular divergence date estimates due to secondary calibration points.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280042

Endocranial casts of early archosaurian reptiles

27 November 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

Sarmatosuchusand the early history of the Archosauria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR107

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYR107

1 reference

322954

322954

1 reference

1 reference

1 reference