Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication (Q28740284)

2

object named as

Julian Catchen

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Quenton Fontenot

4

object named as

Quenton Fontenot

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author name string

Angel Amores

1

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Allyse Ferrara

Local de novo assembly of RAD paired-end contigs using short sequencing reads

3

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language of work or name

English

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publication date

August 2011

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published in

Genetics

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volume

188

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page(s)

799-808

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issue

4

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cites work

1 reference

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

17 March 2017

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Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes

17 March 2017

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Rapid SNP discovery and genetic mapping using sequenced RAD markers

17 March 2017

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

17 March 2017

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The medaka draft genome and insights into vertebrate genome evolution

17 March 2017

1 reference

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Paleontological evidence to date the tree of life

17 March 2017

1 reference

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The advantages and disadvantages of being polyploid

17 March 2017

1 reference

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

17 March 2017

1 reference

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Genome duplication, a trait shared by 22000 species of ray-finned fish

17 March 2017

1 reference

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Normal embryonic stages of the longnose gar, Lepisosteus osseus

17 March 2017

1 reference

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Preservation of duplicate genes by complementary, degenerative mutations

17 March 2017

1 reference

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

17 March 2017

1 reference

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Zebrafish hox clusters and vertebrate genome evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Stacks: building and genotyping Loci de novo from short-read sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

The teleost agouti-related protein 2 gene is an ohnolog gone missing from the tetrapod genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Pineal-specific agouti protein regulates teleost background adaptation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Highly aneuploid zebrafish malignant peripheral nerve sheath tumors have genetic alterations similar to human cancers.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

A strategy for direct mapping and identification of mutations by whole-genome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Fine mapping of ui6.1, a gametophytic factor controlling pollen-side unilateral incompatibility in interspecific solanum hybrids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Complete switchgrass genetic maps reveal subgenome collinearity, preferential pairing and multilocus interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Identification of a maize locus that modulates the hypersensitive defense response, using mutant-assisted gene identification and characterization.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

The impact of whole genome sequencing on model system genetics: get ready for the ride

20 June 2018

1 reference

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Mapping loci associated with tail color and sex determination in the short-lived fish Nothobranchius furzeri.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Every genome sequence needs a good map

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Chapter 8. Evolution and development in the cavefish Astyanax

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Evolutionary mutant models for human disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

A microsatellite-based genetic linkage map of the cichlid fish, Astatotilapia burtoni (Teleostei): a comparison of genomic architectures among rapidly speciating cichlids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Molecular cloning, characterization, and evolutionary analysis of estrogen receptors from phylogenetically ancient fish

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

RAD marker microarrays enable rapid mapping of zebrafish mutations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

From Mendelian to molecular genetics: the Xiphophorus melanoma model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Zebrafish genomic instability mutants and cancer susceptibility.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

A genomic fossil reveals key steps in hemoglobin loss by the antarctic icefishes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Subfunction partitioning, the teleost radiation and the annotation of the human genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

A comparative map of the zebrafish genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Molecular phylogeny of Acipenserinae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Determination of onset of sexual maturation and mating behavior by melanocortin receptor 4 polymorphisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

A mutated EGFR is sufficient to induce malignant melanoma with genetic background-dependent histopathologies.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Rearrangement rate following the whole-genome duplication in teleosts.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

The cusp of evolution and development: a model of cichlid tooth shape diversity.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish".

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176089

Chromosomal characteristics of ribosomal DNA in the primitive semionotiform fish, longnose gar Lepisosteus osseus

27 November 2018

1 reference

12 December 2020

Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish

1 reference

12 December 2020

Birth and death of neuropeptide Y receptor genes in relation to the teleost fish tetraploidization

1 reference

12 December 2020

1 reference

12 December 2020

Buoyancy adaptations in a swim-bladderless Antarctic fish

1 reference

12 December 2020

Vertebrate genome evolution and the zebrafish gene map

1 reference

12 December 2020

10.1534/GENETICS.111.127324

Identifiers

DOI

1 reference

51061

51061

1 reference

1 reference

1 reference