Bayesian inference of ancient human demography from individual genome sequences (Q28740891)

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Melissa J Hubisz

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Brad Gulko

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Charles G Danko

Inference of human population history from individual whole-genome sequences

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language of work or name

English

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publication date

18 September 2011

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published in

Nature Genetics

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volume

43

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issue

10

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page(s)

1031-4

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cites work

1 reference

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17 March 2017

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A map of human genome variation from population-scale sequencing

17 March 2017

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17 March 2017

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A Draft Sequence of the Neandertal Genome

17 March 2017

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Complete Khoisan and Bantu genomes from southern Africa

17 March 2017

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Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

17 March 2017

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The Sequence Alignment/Map format and SAMtools

17 March 2017

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The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group

17 March 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Detecting ancient admixture and estimating demographic parameters in multiple human populations

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

The genetic structure and history of Africans and African Americans

17 March 2017

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The diploid genome sequence of an Asian individual

17 March 2017

1 reference

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Accurate whole human genome sequencing using reversible terminator chemistry

17 March 2017

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

17 March 2017

1 reference

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Statistical evaluation of alternative models of human evolution

17 March 2017

1 reference

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A second generation human haplotype map of over 3.1 million SNPs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

The diploid genome sequence of an individual human

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

A geographically explicit genetic model of worldwide human-settlement history

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Genetic evidence for complex speciation of humans and chimpanzees

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

The application of molecular genetic approaches to the study of human evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Distinguishing migration from isolation: a Markov chain Monte Carlo approach

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Mitochondrial DNA and human evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Approximate Bayesian computation in population genetics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Isolation with migration models for more than two populations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

An accurate sequentially Markov conditional sampling distribution for the coalescent with recombination

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Inferring human population sizes, divergence times and rates of gene flow from mitochondrial, X and Y chromosome resequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245873

Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases

3 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21926973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NG.937

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957309

957309

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1 reference

1 reference