EcoliWiki: a wiki-based community resource for Escherichia coli (Q28740940)

1

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Daniel P Renfro

2

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Gwendowlyn S Knapp

3

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Chanchala R Lairikyengbam

4

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Nathan M Liles

5

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Lili Niu

6

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Amanda M Supak

7

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Anand Venkatraman

8

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Adrienne E Zweifel

9

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Deborah A Siegele

Creative Commons Attribution-NonCommercial 3.0 Unported

10

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language of work or name

English

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publication date

January 2012

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published in

Nucleic Acids Research

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volume

40

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issue

Database issue

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page(s)

D1270-7

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copyright license

start time

12 May 2017

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

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17 March 2017

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What we can learn about Escherichia coli through application of Gene Ontology

17 March 2017

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17 March 2017

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Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

17 March 2017

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The generic genome browser: a building block for a model organism system database

17 March 2017

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

17 March 2017

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EMBOSS: the European Molecular Biology Open Software Suite

17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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The complete genome sequence of Escherichia coli K-12

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Basic local alignment search tool

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

The emerging world of wikis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

PANTHER: a library of protein families and subfamilies indexed by function

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Nucleoid occlusion factor SlmA is a DNA-activated FtsZ polymerization antagonist

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Phenotypic landscape of a bacterial cell

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Dynamic distribution of seqa protein across the chromosome of escherichia coli K-12.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

The transcription unit architecture of the Escherichia coli genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Protein occupancy landscape of a bacterial genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Implementation of GenePattern within the Stanford Microarray Database.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Big data: open-source format needed to aid wiki collaboration

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

ASAP, a systematic annotation package for community analysis of genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Colibri: a functional data base for the Escherichia coli genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

A proposal for a uniform nomenclature in bacterial genetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Random mutagenesis of protein sequences using oligonucleotide cassettes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245172

journals/nar/McIntoshRKLLNSVZSH12

27 November 2018

Identifiers

DOI

10.1093/NAR/GKR880

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DBLP publication ID

1 reference