Quantifying the sequence-function relation in gene silencing by bacterial small RNAs (Q28742043)

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7 February 2020

title

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs (English)

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7

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7 February 2020

author name string

Yue Hao

1

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7 February 2020

Zhongge J Zhang

2

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David W Erickson

3

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Min Huang

4

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7 February 2020

Yingwu Huang

5

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Junbai Li

6

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Hualin Shi

8

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7 February 2020

language of work or name

English

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publication date

8 July 2011

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Proceedings of the National Academy of Sciences of the United States of America

7 February 2020

published in

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volume

108

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issue

30

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page(s)

12473-12478

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A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA

7 February 2020

cites work

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Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

17 March 2017

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Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

17 March 2017

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Regulatory RNAs in bacteria

17 March 2017

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Small RNA binding to 5' mRNA coding region inhibits translational initiation

17 March 2017

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Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

17 March 2017

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A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles

17 March 2017

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The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

17 March 2017

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Quantitative characteristics of gene regulation by small RNA

17 March 2017

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Mechanism of RNA silencing by Hfq-binding small RNAs

17 March 2017

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17 March 2017

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Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

17 March 2017

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Effect of RyhB small RNA on global iron use in Escherichia coli

17 March 2017

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Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

17 March 2017

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MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli

17 March 2017

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The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

17 March 2017

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

17 March 2017

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Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

17 March 2017

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A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

17 March 2017

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The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

17 March 2017

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Hfq is necessary for regulation by the untranslated RNA DsrA

17 March 2017

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Predicting oligonucleotide affinity to nucleic acid targets

17 March 2017

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DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

17 March 2017

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The small RNA regulators of Escherichia coli: roles and mechanisms*

17 March 2017

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Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes

7 April 2017

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Positive regulation by small RNAs and the role of Hfq

3 June 2018

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Computational prediction of sRNAs and their targets in bacteria.

3 June 2018

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Dynamic features of gene expression control by small regulatory RNAs.

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

3 June 2018

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Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs

3 June 2018

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Physical constraints and functional characteristics of transcription factor-DNA interaction.

3 June 2018

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Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA

3 June 2018

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Prediction of antisense oligonucleotide binding affinity to a structured RNA target

3 June 2018

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Quantitative specificity of the Mnt repressor

3 June 2018

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A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator.

3 June 2018

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Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites

3 June 2018

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Base substitution mutants of the lac operator: in vivo and in vitro affinities for lac repressor.

3 June 2018

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Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control.

20 June 2018

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Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1100432108

On the selection and evolution of regulatory DNA motifs

21 January 2018

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Crossref

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Computational approaches for the discovery of bacterial small RNAs

21 January 2018

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21 January 2018

Identifiers

DOI

10.1073/PNAS.1100432108

2 references

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7 February 2020

ADS bibcode

2011PNAS..10812473H

0 references

1 reference

2 references

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7 February 2020

2 references