A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data (Q28749765)

14

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author name string

J Luo

1

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M Schumacher

2

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A Scherer

3

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D Megherbi

5

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T Davison

6

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T Shi

7

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W Tong

8

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L Shi

9

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H Hong

10

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C Zhao

11

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F Elloumi

12

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W Shi

13

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S Lin

15

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G Tillinghast

16

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G Liu

17

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Y Zhou

18

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D Herman

19

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Y Li

20

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Y Deng

21

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H Fang

22

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P Bushel

23

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M Woods

24

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J Zhang

The Pharmacogenomics Journal

25

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language of work or name

English

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publication date

August 2010

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published in

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volume

10

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issue

4

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page(s)

278-91

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cites work

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Adjusting batch effects in microarray expression data using empirical Bayes methods

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Singular value decomposition for genome-wide expression data processing and modeling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Consistency of predictive signature genes and classifiers generated using different microarray platforms.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Orthogonal projections to latent structures as a strategy for microarray data normalization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Adjustment of systematic microarray data biases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2920074

Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer.

3 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.57

A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.57

Application of genomic biomarkers to predict increased lung tumor incidence in 2-year rodent cancer bioassays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.57

A validated gene expression model of high-risk multiple myeloma is defined by deregulated expression of genes mapping to chromosome 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.57

Customized Oligonucleotide Microarray Gene Expression–Based Classification of Neuroblastoma Patients Outperforms Current Clinical Risk Stratification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.57

21 January 2018

Identifiers

DOI

10.1038/TPJ.2010.57

1 reference

Dimensions Publication ID

1010258

1030763566

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1010258

1 reference

1 reference

1 reference