Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species (Q28751090)

4

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Andrew D. Foote

Andrew D Foote

Marcus Thomas Pius Gilbert

3

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M Thomas P Gilbert

15

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Phillip A Morin

1

Phillip A Morin

0 references

John Durban

7

John Durban

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Paul A Wade

6

Paul Wade

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Sandra C Abel Nielsen

12

Sandra C Abel Nielsen

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author name string

Frederick I Archer

2

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Eric E Allen

5

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Kim Parsons

8

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Robert Pitman

9

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Lewyn Li

10

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Pascal Bouffard

11

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Morten Rasmussen

13

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Timothy Harkins

smogd: software for the measurement of genetic diversity

16

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language of work or name

English

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publication date

July 2010

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published in

Genome Research

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volume

20

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page(s)

908-16

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issue

7

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cites work

1 reference

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The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

16 March 2017

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Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales

16 March 2017

1 reference

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Mitochondrial sequence divergence among Antarctic killer whale ecotypes is consistent with multiple species

16 March 2017

1 reference

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Determination of mitochondrial genetic diversity in mammals

16 March 2017

1 reference

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Species concepts and species delimitation

16 March 2017

1 reference

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BEAST: Bayesian evolutionary analysis by sampling trees

16 March 2017

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Clustal W and Clustal X version 2.0

16 March 2017

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

16 March 2017

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Low worldwide genetic diversity in the killer whale (Orcinus orca): implications for demographic history

16 March 2017

1 reference

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Consed: a graphical tool for sequence finishing

16 March 2017

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Mitochondrial DNA sequences of primates: Tempo and mode of evolution

16 March 2017

1 reference

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Defining 'Evolutionarily Significant Units' for conservation

16 March 2017

1 reference

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Evidence for ecological speciation and its alternative

7 April 2017

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Adaptive radiation: contrasting theory with data

7 April 2017

1 reference

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Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations

7 April 2017

1 reference

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Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management

3 June 2018

1 reference

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Mitochondrial DNA as a marker of molecular diversity: a reappraisal.

3 June 2018

1 reference

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3 June 2018

1 reference

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Mitochondrial whims: metabolic rate, longevity and the rate of molecular evolution

3 June 2018

1 reference

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Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic cod (Gadus morhua): origins of the "codmother," transatlantic vicariance and midglacial population expansion

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

3 June 2018

1 reference

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Population genetic structure of savannah elephants in Kenya: conservation and management implications

3 June 2018

1 reference

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Ancient vs. recent processes as factors shaping the genetic variation of the European wild boar: are the effects of the last glaciation still detectable?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Parallel tagged sequencing on the 454 platform

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Targeted high-throughput sequencing of tagged nucleic acid samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Making the most of mitochondrial genomes--markers for phylogeny, molecular ecology and barcodes in Schistosoma (Platyhelminthes: Digenea).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Taxonomic considerations in listing subspecies under the U.S. Endangered Species Act.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Mitogenomic analyses provide new insights into cetacean origin and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Strategies to protect biological diversity and the evolutionary processes that sustain it.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Considering evolutionary processes in conservation biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Population genetic structure of the African elephant in Uganda based on variation at mitochondrial and nuclear loci: evidence for male-biased gene flow

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Sampling properties of DNA sequence data in phylogenetic analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Resolution of the African hominoid trichotomy by use of a mitochondrial gene sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Killer whales (Orcinus orca) face protracted health risks associated with lifetime exposure to PCBs

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Evolution of population structure in a highly social top predator, the killer whale.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Use of chemical tracers in assessing the diet and foraging regions of eastern North Pacific killer whales

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Influence of life-history parameters on organochlorine concentrations in free-ranging killer whales (Orcinus orca) from Prince William Sound, AK.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

Resolution of phylogenetic relationships among recently evolved species as a function of amount of DNA sequence: an empirical study based on woodpeckers (Aves: Picidae).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892092

A standardized genetic differentiation measure

27 November 2018

1 reference

12 December 2020

Persistent organic pollutants and stable isotopes in biopsy samples (2004/2006) from Southern Resident killer whales

1 reference

12 December 2020

Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola

1 reference

12 December 2020

Relationship between three measures of genetic differentiationGST,DESTandG’ST: how wrong have we been?

1 reference

12 December 2020

Possible indirect interactions between transient and resident killer whales: implications for the evolution of foraging specializations in the genus Orcinus.

1 reference

12 December 2020

GENE TREES AND ORGANISMAL HISTORIES: A PHYLOGENETIC APPROACH TO POPULATION BIOLOGY

1 reference

12 December 2020

INFERRING PHYLOGENIES FROM mtDNA VARIATION: MITOCHONDRIAL-GENE TREES VERSUS NUCLEAR-GENE TREES.

1 reference

12 December 2020

An efficient method for the extraction of DNA from vertebrate tissues

1 reference

12 December 2020

Global matrilineal population structure in sperm whales as indicated by mitochondrial DNA sequences

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.102954.109

1 reference

542229

542229

1 reference

1 reference

1 reference