Getting started in computational immunology (Q28757368)

PubMed

PLOS Computational Biology

18 October 2019

computational biology

1 reference

8 April 2021

0 references

Steven H Kleinstein

1

0 references

language of work or name

English

0 references

publication date

29 August 2008

6 references

20 June 2019

13 September 2019

12 October 2019

18 October 2019

23 November 2020

8 April 2021

6 references

20 June 2019

13 September 2019

12 October 2019

18 October 2019

23 November 2020

8 April 2021

4

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issue

8

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page(s)

e1000128

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copyright license

Creative Commons Attribution 4.0 International

6 references

20 June 2019

13 September 2019

12 October 2019

18 October 2019

23 November 2020

Immunoinformatics comes of age

8 April 2021

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Estimating lymphocyte division and death rates from CFSE data

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Computational tools for understanding sequence variability in recombination signals

16 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

16 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Chromosome-specific and noisy IFNB1 transcription in individual virus-infected human primary dendritic cells

23 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Lymph node topology dictates T cell migration behavior

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Differences in potential for amino acid change after mutation reveals distinct strategies for kappa and lambda light-chain variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Mutation parameters from DNA sequence data using graph theoretic measures on lineage trees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

The role of models in understanding CD8+ T-cell memory

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

The dynamics of germinal centre selection as measured by graph-theoretical analysis of mutational lineage trees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Lymphocyte kinetics: the interpretation of labelling data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Modelling viral and immune system dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Predicted and inferred waiting times for key mutations in the germinal centre reaction: evidence for stochasticity in selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Clone: a Monte-Carlo computer simulation of B cell clonal expansion, somatic mutation, and antigen-driven selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Somatic mutation leads to efficient affinity maturation when centrocytes recycle back to centroblasts.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Cyclic re-entry of germinal center B cells and the efficiency of affinity maturation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

The CDR1 sequences of a major proportion of human germline Ig VH genes are inherently susceptible to amino acid replacement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Protein evolution on partially correlated landscapes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Structure and function of anti-DNA autoantibodies derived from a single autoimmune mouse

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

The NK model of rugged fitness landscapes and its application to maturation of the immune response

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518523

Analysis of B cell receptor production and rearrangement. Part I. Light chain rearrangement.

20 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Codon bias and plasticity in immunoglobulins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Problems in using statistical analysis of replacement and silent mutations in antibody genes for determining antigen-driven affinity selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Quantification of cell turnover kinetics using 5-bromo-2'-deoxyuridine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Estimating average cellular turnover from 5–bromo–2'–deoxyuridine (BrdU) measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

An analysis of B cell selection mechanisms in germinal centers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Why are there so few key mutant clones? The influence of stochastic selection and blocking on affinity maturation in the germinal center

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Why do B cells mutate their immunoglobulin receptors?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

In vivo imaging studies shed light on germinal-centre development

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Definition of germinal-center B cell migration in vivo reveals predominant intrazonal circulation patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

Improved methods for detecting selection by mutation analysis of Ig V region sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000128

A spatial model of germinal center reactions: cellular adhesion based sorting of B cells results in efficient affinity maturation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18769677

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

How diverse should the immune system be?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18769677

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000128

0 references

DBLP publication ID

journals/ploscb/Kleinstein08

1 reference

DBLP Dataset 2021-01-02