State Space Truncation with Quantified Errors for Accurate Solutions to Discrete Chemical Master Equation (Q28828703)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Construction of a genetic toggle switch in Escherichia coli

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Tensor methods for parameter estimation and bifurcation analysis of stochastic reaction networks

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

How reliable is the linear noise approximation of gene regulatory networks?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Adaptively biased sequential importance sampling for rare events in reaction networks with comparison to exact solutions from finite buffer dCME method

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Cooperativity in cellular biochemical processes: noise-enhanced sensitivity, fluctuating enzyme, bistability with nonlinear feedback, and other mechanisms for sigmoidal responses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Automated estimation of rare event probabilities in biochemical systems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Probability landscape of heritable and robust epigenetic state of lysogeny in phage lambda

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Solving the chemical master equation using sliding windows

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

A diffusional bimolecular propensity function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Potential energy landscape and robustness of a gene regulatory network: toggle switch

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Calculating biological behaviors of epigenetic states in the phage lambda life cycle

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

It's a noisy business! Genetic regulation at the nanomolar scale

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Changing the mechanism of transcriptional activation by phage lambda repressor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

In vitro comparison of initiation properties of bacteriophage lambda wild-type PR and x3 mutant promoters

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896403

Exact stochastic simulation of coupled chemical reactions

3 June 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

A rigorous derivation of the chemical master equation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

The chemical Langevin equation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

How accurate are the nonlinear chemical Fokker-Planck and chemical Langevin equations?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Mechanism of activation of transcription initiation from the λPRM promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

The finite state projection algorithm for the solution of the chemical master equation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Understanding stochastic simulations of the smallest genetic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Stochastic modeling of cellular networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Stochastic modelling for quantitative description of heterogeneous biological systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Robustness, stability and efficiency of phage lambda genetic switch: dynamical structure analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-016-0149-1

Epigenetics as a first exit problem

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27105653

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Stability puzzles in phage lambda

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27105653

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27105653