Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast. (Q29346872)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24567736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast (English)

1 reference

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Chromatin-binding exonuclease XRN1 YGL173C

8 March 2020

main subject

1 reference

GOA release 2020-03-11

author

Gonzalo Millán-Zambrano

3

1 reference

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8 March 2020

Sebastián Chávez

4

1 reference

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8 March 2020

José E Pérez-Ortín

6

1 reference

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8 March 2020

author name string

Daniel A Medina

1

1 reference

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8 March 2020

Antonio Jordán-Pla

2

1 reference

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8 March 2020

Mordechai Choder

5

1 reference

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8 March 2020

publication date

6 February 2014

1 reference

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8 March 2020

published in

Frontiers in Genetics

1 reference

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8 March 2020

volume

5

1 reference

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8 March 2020

page(s)

1

1 reference

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Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels

8 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Regulon-specific control of transcription elongation across the yeast genome

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

REVIGO summarizes and visualizes long lists of gene ontology terms

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Turnover mechanisms of the stable yeast PGK1 mRNA

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

An interplay between transcription, processing, and degradation determines tRNA levels in yeast

11 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

XRN 5'→3' exoribonucleases: structure, mechanisms and functions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Nonlinear fitness consequences of variation in expression level of a eukaryotic gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Variance in epistasis links gene regulation and evolutionary rate in the yeast genetic interaction network

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

One step back before moving forward: regulation of transcription elongation by arrest and backtracking.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

RNA degradation in Saccharomyces cerevisae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

The 5' → 3' exoribonuclease XRN1/Pacman and its functions in cellular processes and development

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Genome-wide studies of mRNA synthesis and degradation in eukaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Constitutive versus responsive gene expression strategies for growth in changing environments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

A complete set of nascent transcription rates for yeast genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Common gene expression strategies revealed by genome-wide analysis in yeast.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Active-site mutations in the Xrn1p exoribonuclease of Saccharomyces cerevisiae reveal a specific role in meiosis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

Biochemical and genetic characterization of Yra1p in budding yeast

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

A new set of DNA macrochips for the yeast Saccharomyces cerevisiae: features and uses.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3915102

There is a steady-state transcriptome in exponentially growing yeast cells

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24567736

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

KEM1 is involved in filamentous growth of Saccharomyces cerevisiae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24567736

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Promoter elements regulate cytoplasmic mRNA decay

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24567736

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FGENE.2014.00001

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24567736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24567736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

24567736

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24567736%20AND%20SRC:MED&resulttype=core&format=json