Autophagosome formation: core machinery and adaptations (Q29547417)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

review article

1 reference

title

Autophagosome formation: core machinery and adaptations (English)

2 references

PubMed

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

23 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

author name string

Daniel J Klionsky

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

8 January 2020

language of work or name

1 reference

23 April 2017

publication date

1 October 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

23 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

volume

9

2 references

PubMed

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

23 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

page(s)

1102-1109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

issue

10

2 references

PubMed

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

23 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/ncb1007-1102

8 January 2020

exact match

0 references

cites work

Autophagy: molecular machinery for self-eating

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Mechanisms of chaperone-mediated autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Formation process of autophagosome is traced with Apg8/Aut7p in yeast

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Atg27 is required for autophagy-dependent cycling of Atg9

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Atg23 is essential for the cytoplasm to vacuole targeting pathway and efficient autophagy but not pexophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Tor-mediated induction of autophagy via an Apg1 protein kinase complex

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Atg17 regulates the magnitude of the autophagic response

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Apg2p functions in autophagosome formation on the perivacuolar structure

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Hierarchy of Atg proteins in pre-autophagosomal structure organization

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Svp1p defines a family of phosphatidylinositol 3,5-bisphosphate effectors

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Two distinct Vps34 phosphatidylinositol 3-kinase complexes function in autophagy and carboxypeptidase Y sorting in Saccharomyces cerevisiae

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Assortment of phosphatidylinositol 3-kinase complexes--Atg14p directs association of complex I to the pre-autophagosomal structure in Saccharomyces cerevisiae

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Induction of autophagy and inhibition of tumorigenesis by beclin 1

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Functional specificity of the mammalian Beclin-Vps34 PI 3-kinase complex in macroautophagy versus endocytosis and lysosomal enzyme trafficking

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

A ubiquitin-like system mediates protein lipidation

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

A protein conjugation system essential for autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Structure of GATE-16, membrane transport modulator and mammalian ortholog of autophagocytosis factor Aut7p

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

A new protein conjugation system in human. The counterpart of the yeast Apg12p conjugation system essential for autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

A single protease, Apg4B, is specific for the autophagy-related ubiquitin-like proteins GATE-16, MAP1-LC3, GABARAP, and Apg8L

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

The mouse APG10 homologue, an E2-like enzyme for Apg12p conjugation, facilitates MAP-LC3 modification

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Apg10p, a novel protein-conjugating enzyme essential for autophagy in yeast.

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Aminopeptidase I of Saccharomyces cerevisiae is localized to the vacuole independent of the secretory pathway

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Characterization of a novel autophagy-specific gene, ATG29.

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Autophagy in health and disease: a double-edged sword

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

Autophagy defends cells against invading group A Streptococcus

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

The molecular machinery of autophagy: unanswered questions

25 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Determination of four sequential stages during microautophagy in vitro

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Nucleus-vacuole junctions and piecemeal microautophagy of the nucleus in S. cerevisiae

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Development by self-digestion: molecular mechanisms and biological functions of autophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Autophagy and antigen presentation

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

A Unified Nomenclature for Yeast Autophagy-Related Genes

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Convergence of multiple autophagy and cytoplasm to vacuole targeting components to a perivacuolar membrane compartment prior to de novo vesicle formation

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Endothelial nitric-oxide synthase antisense (NOS3AS) gene encodes an autophagy-related protein (APG9-like2) highly expressed in trophoblast

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Recruitment of Atg9 to the preautophagosomal structure by Atg11 is essential for selective autophagy in budding yeast

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Atg9 cycles between mitochondria and the pre-autophagosomal structure in yeasts

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Atg9 sorting from mitochondria is impaired in early secretion and VFT-complex mutants in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

A cycling protein complex required for selective autophagy.

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Molecular mechanisms and regulation of specific and nonspecific autophagy pathways in yeast

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

ATG genes involved in non-selective autophagy are conserved from yeast to man, but the selective Cvt and pexophagy pathways also require organism-specific genes

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Regulation of membrane traffic by phosphoinositide 3-kinases

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Characterization of p150, an adaptor protein for the human phosphatidylinositol (PtdIns) 3-kinase. Substrate presentation by phosphatidylinositol transfer protein to the p150.Ptdins 3-kinase complex

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

A membrane-associated complex containing the Vps15 protein kinase and the Vps34 PI 3-kinase is essential for protein sorting to the yeast lysosome-like vacuole

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The evolutionarily conserved domain of Beclin 1 is required for Vps34 binding, autophagy and tumor suppressor function

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The crystal structure of plant ATG12 and its biological implication in autophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Apg5p functions in the sequestration step in the cytoplasm-to-vacuole targeting and macroautophagy pathways

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The human homolog of Saccharomyces cerevisiae Apg7p is a Protein-activating enzyme for multiple substrates including human Apg12p, GATE-16, GABARAP, and MAP-LC3

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Stimulation of ATG12-ATG5 conjugation by ribonucleic acid

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Structure of Atg5.Atg16, a complex essential for autophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The itinerary of a vesicle component, Aut7p/Cvt5p, terminates in the yeast vacuole via the autophagy/Cvt pathways

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Atg8 is essential for macropexophagy in Hansenula polymorpha.

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Two distinct pathways for targeting proteins from the cytoplasm to the vacuole/lysosome

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Escape of intracellular Shigella from autophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Peroxisome degradation by microautophagy in Pichia pastoris: identification of specific steps and morphological intermediates

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Aminopeptidase I is targeted to the vacuole by a nonclassical vesicular mechanism

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Identification of a cytoplasm to vacuole targeting determinant in aminopeptidase I

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Transport of a large oligomeric protein by the cytoplasm to vacuole protein targeting pathway

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Pexophagy: the selective autophagy of peroxisomes.

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Autophagy and its possible roles in nervous system diseases, damage and repair

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Lysosomal turnover, but not a cellular level, of endogenous LC3 is a marker for autophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The dynamics of autophagy visualized in live cells: from autophagosome formation to fusion with endo/lysosomes

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The early secretory pathway contributes to autophagy in yeast.

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Modification of a ubiquitin-like protein Paz2 conducted micropexophagy through formation of a novel membrane structure

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

PpATG9 encodes a novel membrane protein that traffics to vacuolar membranes, which sequester peroxisomes during pexophagy in Pichia pastoris

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Atg21p is essential for macropexophagy and microautophagy in the yeast Hansenula polymorpha

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

A sorting nexin PpAtg24 regulates vacuolar membrane dynamics during pexophagy via binding to phosphatidylinositol-3-phosphate

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The Hansenula polymorpha ATG25 gene encodes a novel coiled-coil protein that is required for macropexophagy

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Atg26 is not involved in autophagy-related pathways in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

The requirement of sterol glucoside for pexophagy in yeast is dependent on the species and nature of peroxisome inducers

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Peroxisome degradation requires catalytically active sterol glucosyltransferase with a GRAM domain

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

Atg28, a novel coiled-coil protein involved in autophagic degradation of peroxisomes in the methylotrophic yeast Pichia pastoris

1 reference

https://api.crossref.org/works/10.1038%2FNCB1007-1102

7 January 2021

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

Identifiers

3 references

23 April 2017

Consolidated OpenCitations Corpus – April 2017

601086

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17909521%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

8 January 2020

1021106053

0 references

601086

1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17909521

3 references

23 April 2017

Consolidated OpenCitations Corpus – April 2017

601086