Transcription-coupled DNA repair: two decades of progress and surprises (Q29614662)

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17 January 2020

review article

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title

Transcription-coupled DNA repair: two decades of progress and surprises (English)

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17 January 2020

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17 January 2020

1

Philip C Hanawalt

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language of work or name

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30 April 2017

publication date

1 December 2008

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Nature Reviews Molecular Cell Biology

17 January 2020

published in

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volume

9

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17 January 2020

page(s)

958-970

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17 January 2020

issue

12

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Instability and decay of the primary structure of DNA

17 January 2020

cites work

1 reference

Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins

1 May 2017

1 reference

The DNA damage response: ten years after

1 May 2017

1 reference

Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae

1 May 2017

1 reference

ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes

1 May 2017

1 reference

Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II

1 May 2017

1 reference

Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair

1 May 2017

1 reference

Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template

1 May 2017

1 reference

Effect of thymine glycol on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II

1 May 2017

1 reference

Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1

1 May 2017

1 reference

Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome

1 May 2017

1 reference

CPD damage recognition by transcribing RNA polymerase II

1 May 2017

1 reference

Mechanism of transcriptional stalling at cisplatin-damaged DNA

1 May 2017

1 reference

Interactions involving the human RNA polymerase II transcription/nucleotide excision repair complex TFIIH, the nucleotide excision repair protein XPG, and Cockayne syndrome group B (CSB) protein

1 May 2017

1 reference

Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo

1 May 2017

1 reference

Translocation of Cockayne syndrome group A protein to the nuclear matrix: possible relevance to transcription-coupled DNA repair

1 May 2017

1 reference

Chromosomal protein HMGN1 enhances the rate of DNA repair in chromatin

1 May 2017

1 reference

Regulation of human flap endonuclease-1 activity by acetylation through the transcriptional coactivator p300

1 May 2017

1 reference

CSB is a component of RNA pol I transcription

1 May 2017

1 reference

Lipid peroxidation-DNA damage by malondialdehyde

1 May 2017

1 reference

Mutations in the C7orf11 (TTDN1) gene in six nonphotosensitive trichothiodystrophy patients: no obvious genotype-phenotype relationships

1 May 2017

1 reference

An abundant evolutionarily conserved CSB-PiggyBac fusion protein expressed in Cockayne syndrome

1 May 2017

1 reference

Transcription promotes contraction of CAG repeat tracts in human cells

1 May 2017

1 reference

Nucleotide excision repair- and polymerase eta-mediated error-prone removal of mitomycin C interstrand cross-links

1 May 2017

1 reference

The presence of two UvrB subunits in the UvrAB complex ensures damage detection in both DNA strands

1 May 2017

1 reference

1 May 2017

1 reference

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

1 May 2017

1 reference

Non-B DNA structure-induced genetic instability

1 May 2017

1 reference

Non-B DNA conformations, mutagenesis and disease

21 January 2018

1 reference

Inhibitory effect of a short Z-DNA forming sequence on transcription elongation by T7 RNA polymerase

21 January 2018

1 reference

G4-forming sequences in the non-transcribed DNA strand pose blocks to T7 RNA polymerase and mammalian RNA polymerase II.

21 January 2018

1 reference

Transcription-coupled repair and human disease

21 January 2018

1 reference

Recruitment of DNA damage checkpoint proteins to damage in transcribed and nontranscribed sequences

21 January 2018

1 reference

Activation of DNA damage signaling

21 January 2018

1 reference

Paradigms for the three rs: DNA replication, recombination, and repair

21 January 2018

1 reference

What a difference a decade makes: insights into translesion DNA synthesis

21 January 2018

1 reference

DNA structure and human diseases

21 January 2018

1 reference

Defective Repair Replication of DNA in Xeroderma Pigmentosum

21 January 2018

1 reference

Selective repair of specific chromatin domains in UV-irradiated cells from xeroderma pigmentosum complementation group C.

21 January 2018

1 reference

The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA.

21 January 2018

1 reference

The genetic defect in the Chinese hamster ovary cell mutant UV61 permits moderate selective repair of cyclobutane pyrimidine dimers in an expressed gene

21 January 2018

1 reference

Revisiting the rodent repairadox

21 January 2018

1 reference

DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.

21 January 2018

1 reference

The sensitivity of human fibroblasts to N-acetoxy-2-acetylaminofluorene is determined by the extent of transcription-coupled repair, and/or their capability to counteract RNA synthesis inhibition

21 January 2018

1 reference

Strand specificity for UV-induced DNA repair and mutations in the Chinese hamster HPRT gene

21 January 2018

1 reference

Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

21 January 2018

1 reference

Site-specific DNA repair at the nucleosome level in a yeast minichromosome.

21 January 2018

1 reference

Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription

21 January 2018

1 reference

Inhibition of transcription and strand-specific DNA repair by alpha-amanitin in Chinese hamster ovary cells

21 January 2018

1 reference

DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor

21 January 2018

1 reference

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

21 January 2018

1 reference

E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation

21 January 2018

1 reference

Role of DNA bubble rewinding in enzymatic transcription termination

21 January 2018

1 reference

The molecular mechanism of transcription-coupled DNA repair.

21 January 2018

1 reference

Transcription coupled nucleotide excision repair in Escherichia coli can be affected by changing the arginine at position 529 of the beta subunit of RNA polymerase.

21 January 2018

1 reference

DNA repair excision nuclease attacks undamaged DNA. A potential source of spontaneous mutations

21 January 2018

1 reference

Subpathways of nucleotide excision repair and their regulation

21 January 2018

1 reference

Contending with transcriptional arrest during RNAPII transcript elongation

21 January 2018

1 reference

The Cockayne syndrome B protein, involved in transcription-coupled DNA repair, resides in an RNA polymerase II-containing complex

21 January 2018

1 reference

RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair

21 January 2018

1 reference

Model for XPC-independent transcription-coupled repair of pyrimidine dimers in humans

21 January 2018

1 reference

In vivo recruitment of XPC to UV-induced cyclobutane pyrimidine dimers by the DDB2 gene product

21 January 2018

1 reference

Regulation of DNA damage recognition and nucleotide excision repair: another role for p53.

21 January 2018

1 reference

Excision-repair patch lengths are similar for transcription-coupled repair and global genome repair in UV-irradiated human cells

21 January 2018

1 reference

Effect of DNA lesions on transcription elongation

21 January 2018

1 reference

RNA polymerase encounters with DNA damage: transcription-coupled repair or transcriptional mutagenesis?

21 January 2018

1 reference

Elongating RNA polymerase II is disassembled through specific degradation of its largest but not other subunits in response to DNA damage in vivo

21 January 2018

1 reference

The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced

21 January 2018

1 reference

RecA-Dependent Recovery of Arrested DNA Replication Forks

21 January 2018

1 reference

Transcription-coupled nucleotide excision repair in mammalian cells: molecular mechanisms and biological effects

21 January 2018

1 reference

DNA photodamage recognition by RNA polymerase II.

21 January 2018

1 reference

Recruitment of damaged DNA to the nuclear matrix in hamster cells following ultraviolet irradiation

21 January 2018

1 reference

RNA polymerase II bypasses 8-oxoguanine in the presence of transcription elongation factor TFIIS.

21 January 2018

1 reference

A compromised yeast RNA polymerase II enhances UV sensitivity in the absence of global genome nucleotide excision repair

21 January 2018

1 reference

Chromosomal protein HMGN1 enhances the acetylation of lysine 14 in histone H3.

21 January 2018

1 reference

Interaction of p21(CDKN1A) with PCNA regulates the histone acetyltransferase activity of p300 in nucleotide excision repair

21 January 2018

1 reference

Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo

21 January 2018

1 reference

Lack of gene- and strand-specific DNA repair in RNA polymerase III-transcribed human tRNA genes

21 January 2018

1 reference

The transcriptional organization of the ribosomal RNA genes in mouse L cells

21 January 2018

1 reference

Lack of transcription-coupled repair in mammalian ribosomal RNA genes

21 January 2018

1 reference

Transcription-coupled repair in RNA polymerase I-transcribed genes of yeast

21 January 2018

1 reference

RPA and ATR link transcriptional stress to p53

21 January 2018

1 reference

Transcription arrest at DNA damage sites

21 January 2018

1 reference

T7 RNA polymerase bypass of large gaps on the template strand reveals a critical role of the nontemplate strand in elongation

21 January 2018

1 reference

Template strand gap bypass is a general property of prokaryotic RNA polymerases: implications for elongation mechanisms.

21 January 2018

1 reference

Defective repair of ionizing radiation damage in Cockayne's syndrome and xeroderma pigmentosum group G.

21 January 2018

1 reference

Host cell reactivation of plasmids containing oxidative DNA lesions is defective in Cockayne syndrome but normal in UV-sensitive syndrome fibroblasts

21 January 2018

1 reference

Complementation of the oxidatively damaged DNA repair defect in Cockayne syndrome A and B cells by Escherichia coli formamidopyrimidine DNA glycosylase.

21 January 2018

1 reference

Transcription through 8-oxoguanine in DNA repair-proficient and Csb(-)/Ogg1(-) DNA repair-deficient mouse embryonic fibroblasts is dependent upon promoter strength and sequence context

21 January 2018

1 reference

Effect of 8-oxoguanine on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II.

21 January 2018

1 reference

Repair of 8-oxoG is slower in endogenous nuclear genes than in mitochondrial DNA and is without strand bias.

21 January 2018

1 reference

Lack of sequence-specific removal of N-methylpurines from cellular DNA.

21 January 2018

1 reference

Transcriptional mutagenesis induced by uracil and 8-oxoguanine in Escherichia coli.

21 January 2018

1 reference

RNA polymerase II bypass of oxidative DNA damage is regulated by transcription elongation factors

21 January 2018

1 reference

The case for 8,5'-cyclopurine-2'-deoxynucleosides as endogenous DNA lesions that cause neurodegeneration in xeroderma pigmentosum

21 January 2018

1 reference

Malondialdehyde adducts in DNA arrest transcription by T7 RNA polymerase and mammalian RNA polymerase II.

21 January 2018

1 reference

Transcription arrest at an abasic site in the transcribed strand of template DNA.

21 January 2018

1 reference

Transcriptional inhibition by an oxidized abasic site in DNA.

21 January 2018

1 reference

Dynamics and diversions in base excision DNA repair of oxidized abasic lesions

21 January 2018

1 reference

Xeroderma pigmentosum. Cutaneous, ocular, and neurologic abnormalities in 830 published cases

21 January 2018

1 reference

DNA excision-repair defect of xeroderma pigmentosum prevents removal of a class of oxygen free radical-induced base lesions

21 January 2018

1 reference

Nucleotide excision repair and human syndromes

21 January 2018

1 reference

21 January 2018

UV-sensitive syndrome

1 reference

Ultraviolet-sensitive syndrome cells are defective in transcription-coupled repair of cyclobutane pyrimidine dimers

21 January 2018

1 reference

Impaired interferon production and natural killer cell activation in patients with the skin cancer-prone disorder, xeroderma pigmentosum

21 January 2018

1 reference

UV-induced inhibition of transcription involves repression of transcription initiation and phosphorylation of RNA polymerase II.

21 January 2018

1 reference

Cockayne syndrome and xeroderma pigmentosum

21 January 2018

1 reference

XPD mutations prevent TFIIH-dependent transactivation by nuclear receptors and phosphorylation of RARalpha

21 January 2018

1 reference

Dysregulation of the peroxisome proliferator-activated receptor target genes by XPD mutations

21 January 2018

1 reference

Complete absence of Cockayne syndrome group B gene product gives rise to UV-sensitive syndrome but not Cockayne syndrome

21 January 2018

1 reference

Deletion of 5' sequences of the CSB gene provides insight into the pathophysiology of Cockayne syndrome

21 January 2018

1 reference

Transcription regulation through promoter-proximal pausing of RNA polymerase II.

21 January 2018

1 reference

DNA architecture: from G to Z.

21 January 2018

1 reference

Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA

21 January 2018

1 reference

A RECQ5-RNA polymerase II association identified by targeted proteomic analysis of human chromatin

21 January 2018

1 reference

Association of human DNA helicase RecQ5beta with RNA polymerase II and its possible role in transcription.

21 January 2018

1 reference

A conserved G4 DNA binding domain in RecQ family helicases.

21 January 2018

1 reference

Transcription-induced CAG repeat contraction in human cells is mediated in part by transcription-coupled nucleotide excision repair

21 January 2018

1 reference

Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair

21 January 2018

1 reference

Detection and determination of oligonucleotide triplex formation-mediated transcription-coupled DNA repair in HeLa nuclear extracts

21 January 2018

1 reference

Cockayne syndrome: Review of 140 cases

21 January 2018

1 reference

Gene transcription increases DNA damage-induced mutagenesis in mammalian stem cells.

21 January 2018

1 reference

Influence of irofulven, a transcription-coupled repair-specific antitumor agent, on RNA polymerase activity, stability and dynamics in living mammalian cells

21 January 2018

1 reference

Quantitative correlation of drug bioactivation and deoxyadenosine alkylation by acylfulvene

21 January 2018

1 reference

Irofulven cytotoxicity depends on transcription-coupled nucleotide excision repair and is correlated with XPG expression in solid tumor cells

21 January 2018

1 reference

Antiproliferative activity of ecteinascidin 743 is dependent upon transcription-coupled nucleotide-excision repair.

21 January 2018

1 reference

The Y-family DNA polymerase kappa (pol kappa) functions in mammalian nucleotide-excision repair

21 January 2018

1 reference

Sequential recruitment of the repair factors during NER: the role of XPG in initiating the resynthesis step.

21 January 2018

1 reference

Sealing of chromosomal DNA nicks during nucleotide excision repair requires XRCC1 and DNA ligase III alpha in a cell-cycle-specific manner

21 January 2018

1 reference

A phylogenomic study of DNA repair genes, proteins, and processes

21 January 2018

1 reference

Deficient repair of chemical adducts in alpha DNA of monkey cells

31 March 2020

1 reference

DNA repair. Engagement with transcription

31 March 2020

1 reference

Repair of active and silenced rDNA in yeast: the contributions of photolyase and transcription-couples nucleotide excision repair

31 March 2020

1 reference

Retroviral-mediated correction of DNA repair defect in xeroderma pigmentosum cells is associated with recovery of catalase activity

31 March 2020

1 reference

A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription

31 March 2020

1 reference

Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence

31 March 2020

1 reference

Transcriptional properties of RNA polymerase II within triplet repeat-containing DNA from the human myotonic dystrophy and fragile X loci

31 March 2020

1 reference

Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli.

31 March 2020

1 reference

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17 January 2020

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