Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations (Q29615143)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

author name string

Guerois R

series ordinal

1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

Nielsen JE

series ordinal

2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

Serrano L

series ordinal

3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

language of work or name

1 reference

30 April 2017

publication date

5 July 2002

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

Journal of Molecular Biology

30 April 2017

published in

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

volume

320

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

page(s)

369-87

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

issue

2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

Empirical potentials and functions for protein folding and binding.

30 April 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Effective energy functions for protein structure prediction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

A simple model for calculating the kinetics of protein folding from three-dimensional structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Forces contributing to the conformational stability of proteins

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

7 January 2021

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

inferred from DOI database lookup

7 January 2021

based on heuristic

Knowledge-based potentials for proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Are database-derived potentials valid for scoring both forward and inverted protein folding?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Stability changes upon mutation of solvent-accessible residues in proteins evaluated by database-derived potentials.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Suggestions for "safe" residue substitutions in site-directed mutagenesis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Mutagenesis of a buried polar interaction in an SH3 domain: sequence conservation provides the best prediction of stability effects.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The identification of conserved interactions within the SH3 domain by alignment of sequences and structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Elucidating the folding problem of alpha-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Stabilization of proteins by rational design of alpha-helix stability using helix/coil transition theory.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Improving the refolding yield of interleukin-4 through the optimization of local interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Stabilisation of α-helices by site-directed mutagenesis reveals the importance of secondary structure in the transition state for acylphosphatase folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

ProTherm: Thermodynamic Database for Proteins and Mutants.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

ProTherm, version 2.0: thermodynamic database for proteins and mutants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Buried waters and internal cavities in monomeric proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contribution of water molecules in the interior of a protein to the conformational stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Excluded volume approximation to protein-solvent interaction. The solvent contact model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Evaluation of protein models by atomic solvation preference.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The interpretation of protein structures: Estimation of static accessibility

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Obligatory steps in protein folding and the conformational diversity of the transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Experiment and theory highlight role of native state topology in SH3 folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Mapping the interactions present in the transition state for unfolding/folding of FKBP12.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

A single-point mutation in the extreme heat- and pressure-resistant sso7d protein from sulfolobus solfataricus leads to a major rearrangement of the hydrophobic core

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Critical role of beta-hairpin formation in protein G folding.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

A breakdown of symmetry in the folding transition state of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contributions of the ionizable amino acids to the stability of staphylococcal nuclease.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Persistence of native-like topology in a denatured protein in 8 M urea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

WHAT IF: a molecular modeling and drug design program

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Flexibility and packing in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Empirical correlation for the replacement of Ala by Gly: importance of amino acid secondary intrinsic propensities.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Comparing the polarities of the amino acids: side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Determination of atomic desolvation energies from the structures of crystallized proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

A simplified representation of protein conformations for rapid simulation of protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bonds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contribution of hydrogen bonding to the conformational stability of ribonuclease T1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contribution of buried hydrogen bonds to protein stability. The crystal structures of two barnase mutants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Discrimination of near-native protein structures from misfolded models by empirical free energy functions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Hydrogen bond stereochemistry in protein structure and function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Flexible-geometry conformational energy maps for the amino acid residue preceding a proline

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Long-range order in the src SH3 folding transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Core and surface mutations affect folding kinetics, stability and cooperativity in IL-1 beta: does alteration in buried water play a role?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Modelling of solvent positions around polar groups in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Patterns for prediction of hydration around polar residues in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Local water bridges and protein conformational stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Direct observation of better hydration at the N terminus of an alpha-helix with glycine rather than alanine as the N-cap residue

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Rational design of specific high-affinity peptide ligands for the Abl-SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Nine hydrophobic side chains are key determinants of the thermodynamic stability and oligomerization status of tumour suppressor p53 tetramerization domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

A mixed-charge pair in human interleukin 4 dominates high-affinity interaction with the receptor alpha chain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Crystal structure of the interleukin-4/receptor alpha chain complex reveals a mosaic binding interface

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

The use of position-specific rotamers in model building by homology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Improving macromolecular electrostatics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Structural analysis of a non-contiguous second-site revertant in T4 lysozyme shows that increasing the rigidity of a protein can enhance its stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

Studies on protein stability with T4 lysozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900442-4

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0022-2836(02)00442-4

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12079393

30 April 2017

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

756969

OpenCitations bibliographic resource ID

756969

1 reference