DISEASES: Text mining and data integration of disease–gene associations (Q30002392)

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Albert Pallejà

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Kalliopi Tsafou

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Janos X. Binder

CoPub Mapper: mining MEDLINE based on search term co-publication

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publication date

March 2015

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published in

Methods

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volume

74

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page(s)

83-89

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cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

CoPub update: CoPub 5.0 a text mining system to answer biological questions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

FACTA: a text search engine for finding associated biomedical concepts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Discovering and visualizing indirect associations between biomedical concepts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Activities at the Universal Protein Resource (UniProt)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

DistiLD Database: diseases and traits in linkage disequilibrium blocks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Literature mining for the biologist: from information retrieval to biological discovery

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Gene name ambiguity of eukaryotic nomenclatures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Recognition of protein/gene names from text using an ensemble of classifiers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

ProMiner: rule-based protein and gene entity recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Resolving abbreviations to their senses in Medline.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Genenames.org: the HGNC resources in 2013

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Mining electronic health records: towards better research applications and clinical care

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

An overview of MetaMap: historical perspective and recent advances

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Constructing a semantic predication gold standard from the biomedical literature

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Disease Ontology: a backbone for disease semantic integration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Annotating the human genome with Disease Ontology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

The Comparative Toxicogenomics Database: update 2013.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Linkage disequilibrium--understanding the evolutionary past and mapping the medical future

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Genetic mapping in human disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

HGVbaseG2P: a central genetic association database

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

GWASdb: a database for human genetic variants identified by genome-wide association studies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

A haplotype map of the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

GeneCards Version 3: the human gene integrator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Development of a versatile enrichment analysis tool reveals associations between the maternal brain and mental health disorders, including autism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Database resources of the National Center for Biotechnology Information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

The environment ontology: contextualising biological and biomedical entities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

STITCH 4: integration of protein-chemical interactions with user data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020

7 January 2021

The encyclopedia of life

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2014.11.020