MOTIPS: automated motif analysis for predicting targets of modular protein domains (Q30156864)

25 September 2017

MOTIPS: automated motif analysis for predicting targets of modular protein domains (English)

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25 September 2017

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8

Mark B Gerstein

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25 September 2017

7

Michael Snyder

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25 September 2017

Hugo Y K Lam

1

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25 September 2017

Philip M Kim

2

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25 September 2017

Janine Mok

3

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25 September 2017

Raffi Tonikian

4

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25 September 2017

Sachdev S Sidhu

5

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25 September 2017

Benjamin E Turk

6

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25 September 2017

language of work or name

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11 May 2010

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25 September 2017

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25 September 2017

11

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25 September 2017

243

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https://scigraph.springernature.com/pub.10.1186/1471-2105-11-243

25 September 2017

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cites work

Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs

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Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins

3 June 2018

1 reference

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Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

A rapid method for determining protein kinase phosphorylation specificity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Where did the BLOSUM62 alignment score matrix come from?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Accurate prediction of solvent accessibility using neural networks-based regression.

3 June 2018

1 reference

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Data mining in bioinformatics using Weka

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

The DISOPRED server for the prediction of protein disorder

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

MUSCLE: multiple sequence alignment with high accuracy and high throughput

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Protein interaction networks by proteome peptide scanning

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Optimization of specificity in a cellular protein interaction network by negative selection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Prediction of disordered regions in proteins from position specific score matrices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

3 June 2018

1 reference

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Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

3 June 2018

1 reference

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ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

The Structure and Function of Proline Recognition Domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

AL2CO: calculation of positional conservation in a protein sequence alignment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

A motif-based profile scanning approach for genome-wide prediction of signaling pathways

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Regulation of the actin cytoskeleton organization in yeast by a novel serine/threonine kinase Prk1p

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Protein modules and signalling networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

The protein kinase family: conserved features and deduced phylogeny of the catalytic domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Amino acid substitution matrices from protein blocks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882932

Using substitution probabilities to improve position-specific scoring matrices

3 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20459839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Repeating sequences and gene duplication in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20459839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-11-243

1 reference

journals/bmcbi/LamKMTSTSG10

25 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1050596416

0 references

Fatcat ID

release_6hjwh5cdjzhujjflnvhmpkar24

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6hjwh5cdjzhujjflnvhmpkar24

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

25 September 2017

1 reference