SH3-Hunter: discovery of SH3 domain interaction sites in proteins (Q30157984)

16 October 2017

SH3-Hunter: discovery of SH3 domain interaction sites in proteins (English)

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16 October 2017

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Manuela Helmer-Citterich

series ordinal

5

object named as

Manuela Helmer-Citterich

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16 October 2017

4

Gabriele Ausiello

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16 October 2017

2

Daniele Peluso

1 reference

16 October 2017

1

Enrico Ferraro

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16 October 2017

Allegra Via

3

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PMCID

1933191

16 October 2017

language of work or name

English

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publication date

7 May 2007

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16 October 2017

Nucleic Acids Research

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16 October 2017

35

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16 October 2017

Web Server issue

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16 October 2017

W451-4

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Ubiquitin binds to and regulates a subset of SH3 domains

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

Intracellular protein interaction mapping with FRET hybrids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

A regularized discriminative model for the prediction of protein-peptide interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

Reduction of hepatitis C virus NS5A phosphorylation through its interaction with amphiphysin II.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

Protein interaction networks by proteome peptide scanning

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

How SH3 domains recognize proline

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

Can we infer peptide recognition specificity mediated by SH3 domains?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

SH3 domains: complexity in moderation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933191

3 June 2018

Identifiers

DOI

10.1093/NAR/GKM296

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journals/nar/FerraroPVAH07

16 October 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

1 reference

PMCID

1933191