Molecular dynamics of the DNA-binding domain of the papillomavirus E2 transcriptional regulator uncover differential properties for DNA target accommodation. (Q30158007)

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English	Molecular dynamics of the DNA-binding domain of the papillomavirus E2 transcriptional regulator uncover differential properties for DNA target accommodation.	scientific article

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28 December 2019

Molecular dynamics of the DNA-binding domain of the papillomavirus E2 transcriptional regulator uncover differential properties for DNA target accommodation (English)

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28 December 2019

molecular dynamics simulation

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28 December 2019

Alessandro Desideri

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28 December 2019

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Santolamazza A

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28 December 2019

Eliseo T

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28 December 2019

de Prat-Gay G

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28 December 2019

Cicero DO

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30 March 2007

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28 December 2019

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28 December 2019

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28 December 2019

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28 December 2019

2385-2395

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28 December 2019

The papillomavirus E2 proteins: structure, function, and biology

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21 January 2018

Viral E1 and E2 proteins support replication of homologous and heterologous papillomaviral origins

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21 January 2018

Structural correlates for enhanced stability in the E2 DNA-binding domain from bovine papillomavirus

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21 January 2018

Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein

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21 January 2018

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

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21 January 2018

Crystal structure of the E2 DNA-binding domain from human papillomavirus type 16: implications for its DNA binding-site selection mechanism

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21 January 2018

Structural and thermodynamic basis for the enhanced transcriptional control by the human papillomavirus strain-16 E2 protein

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21 January 2018

Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA 1

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21 January 2018

The folding mechanism of a dimeric beta-barrel domain

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21 January 2018

The DNA-binding domain of HPV-16 E2 protein interaction with the viral enhancer: protein-induced DNA bending and role of the nonconserved core sequence in binding site affinity

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21 January 2018

DNA bending by an adenine-thymine tract and its role in gene regulation

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21 January 2018

The role of DNA structure and dynamics in the recognition of bovine papillomavirus E2 protein target sequences

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21 January 2018

Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanism

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21 January 2018

Free energy contributions to direct readout of a DNA sequence

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21 January 2018

Increased rigidity of eglin c at acidic pH: evidence from NMR spin relaxation and MD simulations

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SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

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21 January 2018

Essential dynamics of proteins

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21 January 2018

Solution structure of the DNA-binding domain of a human papillomavirus E2 protein: evidence for flexible DNA-binding regions

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21 January 2018

Intermolecular and intramolecular readout mechanisms in protein-DNA recognition.

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21 January 2018

The Amber biomolecular simulation programs

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21 January 2018

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

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21 January 2018

Force fields for protein simulations

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21 January 2018

Comparison of simple potential functions for simulating liquid water

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21 January 2018

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

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21 January 2018

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

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21 January 2018

GROMACS: A message-passing parallel molecular dynamics implementation

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21 January 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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21 January 2018

Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease

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21 January 2018

Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

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Backbone dynamics of the Bacillus subtilis glucose permease IIA domain determined from 15N NMR relaxation measurements

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

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RASMOL: biomolecular graphics for all

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VMD: visual molecular dynamics

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21 January 2018

Bovine papillomavirus E2 trans-activating gene product binds to specific sites in papillomavirus DNA

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21 January 2018

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