Increased backbone mobility in beta-barrel enhances entropy gain driving binding of N-TIMP-1 to MMP-3. (Q30164834)

9 June 2017

Increased backbone mobility in beta-barrel enhances entropy gain driving binding of N-TIMP-1 to MMP-3. (English)

1 reference

9 June 2017

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Steven R Van Doren

6

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author name string

S Arumugam

1

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9 June 2017

Guanghua Gao

2

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9 June 2017

Brian L Patton

3

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9 June 2017

Valentyna Semenchenko

4

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9 June 2017

Keith Brew

5

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9 June 2017

language of work or name

English

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publication date

1 March 2003

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Journal of Molecular Biology

9 June 2017

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9 June 2017

327

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9 June 2017

719-734

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9 June 2017

3

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The stromal proteinase MMP3/stromelysin-1 promotes mammary carcinogenesis

9 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Antisense RNA-induced reduction in murine TIMP levels confers oncogenicity on Swiss 3T3 cells

7 January 2021

1 reference

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Residue 2 of TIMP-1 is a major determinant of affinity and specificity for matrix metalloproteinases but effects of substitutions do not correlate with those of the corresponding P1' residue of substrate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Folding and characterization of the amino-terminal domain of human tissue inhibitor of metalloproteinases-1 (TIMP-1) expressed at high yield in E. coli

7 January 2021

1 reference

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Mechanism of inhibition of the human matrix metalloproteinase stromelysin-1 by TIMP-1

7 January 2021

1 reference

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Crystal structure of the stromelysin catalytic domain at 2.0 A resolution: inhibitor-induced conformational changes

7 January 2021

1 reference

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NMR structure of tissue inhibitor of metalloproteinases-1 implicates localized induced fit in recognition of matrix metalloproteinases

7 January 2021

1 reference

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High resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 and characterization of its interaction site with matrix metalloproteinase-3

7 January 2021

1 reference

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Three-dimensional structure of human tissue inhibitor of metalloproteinases-2 at 2.1 A resolution

7 January 2021

1 reference

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Crystal structure of the complex formed by the membrane type 1-matrix metalloproteinase with the tissue inhibitor of metalloproteinases-2, the soluble progelatinase A receptor

7 January 2021

1 reference

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Rapid measurement of binding constants and heats of binding using a new titration calorimeter

7 January 2021

1 reference

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Prediction of binding energetics from structure using empirical parameterization

7 January 2021

1 reference

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The effect of matrix metalloproteinase complex formation on the conformational mobility of tissue inhibitor of metalloproteinases-2 (TIMP-2)

7 January 2021

1 reference

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Dynamics of stromelysin/inhibitor interactions studied by 15N NMR relaxation measurements: comparison of ligand binding to the S1-S3 and S'1-S'3 subsites

7 January 2021

1 reference

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High-resolution solution structure of the catalytic fragment of human collagenase-3 (MMP-13) complexed with a hydroxamic acid inhibitor

7 January 2021

1 reference

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15N NMR relaxation studies of free and inhibitor-bound 4-oxalocrotonate tautomerase: backbone dynamics and entropy changes of an enzyme upon inhibitor binding

7 January 2021

1 reference

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Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange

7 January 2021

1 reference

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Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex

7 January 2021

1 reference

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Backbone dynamics of the C-terminal domain of Escherichia coli topoisomerase I in the absence and presence of single-stranded DNA.

7 January 2021

1 reference

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Changes in the NMR-derived motional parameters of the insulin receptor substrate 1 phosphotyrosine binding domain upon binding to an interleukin 4 receptor phosphopeptide

7 January 2021

1 reference

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Increased protein backbone conformational entropy upon hydrophobic ligand binding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs

7 January 2021

1 reference

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Insights into the local residual entropy of proteins provided by NMR relaxation

7 January 2021

1 reference

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Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

7 January 2021

1 reference

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Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease

7 January 2021

1 reference

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Functional dynamics in the active site of the ribonuclease binase

7 January 2021

1 reference

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Structural and dynamic analysis of residual dipolar coupling data for proteins

7 January 2021

1 reference

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For Guldberg and Waage, with love and cratic entropy

7 January 2021

1 reference

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Contribution of translational and rotational motions to molecular association in aqueous solution

7 January 2021

1 reference

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Temperature dependence of the hydrophobic interaction in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Tissue inhibitor of metalloproteinases-1 undergoes microsecond to millisecond motions at sites of matrix metalloproteinase-induced fit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme

7 January 2021

1 reference

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The use of model selection in the model-free analysis of protein dynamics

7 January 2021

1 reference

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Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data

7 January 2021

1 reference

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A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

7 January 2021

1 reference

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Energetics of target peptide recognition by calmodulin: a calorimetric study

7 January 2021

1 reference

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7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Tissue inhibitors of matrix metalloendopeptidases

7 January 2021

1 reference

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The propagation of binding interactions to remote sites in proteins: analysis of the binding of the monoclonal antibody D1.3 to lysozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Entropy in protein folding and in protein-protein interactions

7 January 2021

1 reference

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The "cratic correction" and related fallacies

7 January 2021

1 reference

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The statistical-thermodynamic basis for computation of binding affinities: a critical review

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Entropy in biological binding processes: estimation of translational entropy loss.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

The contribution of vibrational entropy to molecular association. The dimerization of insulin.

7 January 2021

1 reference

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Association entropy in adsorption processes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

The price of lost freedom: entropy of bimolecular complex formation

7 January 2021

1 reference

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Bound water molecules and conformational stabilization help mediate an antigen-antibody association

7 January 2021

1 reference

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Global changes in amide hydrogen exchange rates for a protein antigen in complex with three different antibodies.

7 January 2021

1 reference

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Purification and characterization of the human stromelysin catalytic domain expressed in Escherichia coli

7 January 2021

1 reference

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Mutation of the active site glutamic acid of human gelatinase A: effects on latency, catalysis, and the binding of tissue inhibitor of metalloproteinases-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Expression, characterization and structure determination of an active site mutant (Glu202-Gln) of mini-stromelysin-1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins

7 January 2021

1 reference

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Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

7 January 2021

1 reference

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MOLMOL: a program for display and analysis of macromolecular structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Evaluation of uncertainty in alignment tensors obtained from dipolar couplings

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Estimation of uncertainties in X-ray refinement results by use of perturbed structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

Dynamics of ribonuclease H: temperature dependence of motions on multiple time scales.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900180-3

10.1016/S0022-2836(03)00180-3

7 January 2021

Identifiers

DOI

1 reference

9 June 2017

1 reference