Amino acid distributions in integral membrane protein structures (Q30168203)

9 June 2017

Amino acid distributions in integral membrane protein structures (English)

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9 June 2017

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M B Ulmschneider

1

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PubMed ID

11334619

9 June 2017

M S Sansom

series ordinal

2

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PubMed ID

11334619

9 June 2017

language of work or name

English

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publication date

1 May 2001

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Biochimica et Biophysica Acta

9 June 2017

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9 June 2017

1512

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9 June 2017

1

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9 June 2017

1-14

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Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

9 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Do transmembrane protein superfolds exist?

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Overexpression of integral membrane proteins for structural studies

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Effective energy functions for protein structure prediction.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

A model recognition approach to the prediction of all-helical membrane protein structure and topology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Prediction of transmembrane segments in proteins utilising multiple sequence alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Prediction of membrane protein topology utilizing multiple sequence alignments.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Transmembrane helices predicted at 95% accuracy

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Topology prediction for helical transmembrane proteins at 86% accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

A predictor of transmembrane alpha-helix domains of proteins based on neural networks.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Beta-barrel proteins from bacterial outer membranes: structure, function and refolding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

beta-Barrel membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

The bacterial porin superfamily: sequence alignment and structure prediction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Prediction of membrane-spanning beta-strands and its application to maltoporin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Identification of membrane spanning beta strands in bacterial porins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Prediction by a neural network of outer membrane beta-strand protein topology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Statistical analysis of predicted transmembrane alpha-helices.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Internal packing of helical membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Are membrane proteins "inside-out" proteins?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Helix packing in membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Architecture of beta-barrel membrane proteins: analysis of trimeric porins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

The structure of porin fromRhodobacter capsulatusat 1.8 Å resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Are we destined to repeat history?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Electron-crystallographic refinement of the structure of bacteriorhodopsin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Topogenic signals in integral membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Glycine and beta-branched residues support and modulate peptide helicity in membrane environments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Peptides in membranes: helicity and hydrophobicity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Folding proteins into membranes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Electron transfer by domain movement in cytochrome bc1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

How proteins adapt to a membrane-water interface

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Hydrophobic organization of membrane proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Structure of the outer membrane protein A transmembrane domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Transmembrane Signaling across the Ligand-Gated FhuA Receptor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Structural evidence for dimerization-regulated activation of an integral membrane phospholipase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

The preference of tryptophan for membrane interfaces.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

The Photosynthetic Reaction Center from the Purple Bacterium Rhodopseudomonas viridis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Crystal structures explain functional properties of two E. coli porins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Membrane simulations: bigger and better?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Different Membrane Anchoring Positions of Tryptophan and Lysine in Synthetic Transmembrane α-Helical Peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Hypothesis about the function of membrane-buried proline residues in transport proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Proline kinks in transmembrane alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Conserved positioning of proline residues in membrane-spanning helices of ion-channel proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Hinges, swivels and switches: the role of prolines in signalling via transmembrane alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Molecular mechanism of vectorial proton translocation by bacteriorhodopsin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

The fold of human aquaporin 1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0005-2736%2801%2900299-1

10.1016/S0005-2736(01)00299-1

7 January 2021

Identifiers

DOI

1 reference

9 June 2017

1 reference

PubMed ID

11334619