Molecular dynamics simulations of water within models of ion channels (Q30177006)

15 October 2017

Molecular dynamics simulations of water within models of ion channels (English)

1 reference

molecular dynamics simulation

15 October 2017

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author name string

J Breed

1

1 reference

15 October 2017

R Sankararamakrishnan

2

1 reference

15 October 2017

I D Kerr

3

1 reference

15 October 2017

M S Sansom

4

1 reference

15 October 2017

language of work or name

English

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publication date

1 April 1996

1 reference

15 October 2017

1 reference

15 October 2017

70

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15 October 2017

4

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15 October 2017

1643-1661

1 reference

Water in channel-like cavities: structure and dynamics.

15 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Transbilayer pores formed by beta-barrels: molecular modeling of pore structures and properties

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Realistic simulations of native-protein dynamics in solution and beyond

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

A molecular dynamics study of solvent behavior around a protein.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Rotational and translational water diffusion in the hemoglobin hydration shell: dielectric and proton nuclear relaxation measurements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Internal and interfacial dielectric properties of cytochrome c from molecular dynamics in aqueous solution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Structural basis for sugar translocation through maltoporin channels at 3.1 A resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

The nature of ion and water barrier crossings in a simulated ion channel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Design of molecular function: channels of communication

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Extended dipolar chain model for ion channels: electrostriction effects and the translocational energy barrier

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Refined structure of the porin from Rhodopseudomonas blastica. Comparison with the porin from Rhodobacter capsulatus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Structural organization of the pentameric transmembrane alpha-helices of phospholamban, a cardiac ion channel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Molecular Dynamics Simulations of the Gramicidin Channel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Alpha-helical hydrophobic polypeptides form proton-selective channels in lipid bilayers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Structure and function of channel-forming peptaibols

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

The pore dimensions of gramicidin A.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Stratification of the channel domain in neurotransmitter receptors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

A voltage-gated ion channel model inferred from the crystal structure of alamethicin at 1.5-Å resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

The structure of ion channels in membranes of excitable cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Accurate simulation of protein dynamics in solution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Voltage-dependent channel formation by rods of helical polypeptides

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Water-protein interactions: theory and experiment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

The biophysics of peptide models of ion channels

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Time-correlation analysis of simulated water motion in flexible and rigid gramicidin channels

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Ion transport in a model gramicidin channel. Structure and thermodynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Monte Carlo simulation of the water in a channel with charges

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Diffusion and kinetic approaches to describe permeation in ionic channels

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

An open-channel blocker interacts with adjacent turns of α-helices in the nicotinic acetylcholine receptor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

An SS1-SS2 beta-barrel structure for the voltage-activated potassium channel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Quantitation of physical-chemical properties of the aqueous phase inside the phoE ionic channel.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Crystal structures explain functional properties of two E. coli porins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Motions and Relaxations of Confined Liquids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Electrostatic properties of two porin channels from Escherichia coli

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Properties of ion channels formed by Staphylococcus aureus delta-toxin.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1225133

Synthetic amphiphilic peptide models for protein ion channels

26 November 2018

1 reference

12 December 2020

Alamethicin channels modelled by simulated annealing and molecular dynamics

1 reference

12 December 2020

Acetylcholine receptor channel imaged in the open state

1 reference

12 December 2020

Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme

1 reference

12 December 2020

Ion channel formation by synthetic analogues of staphylococcal δ-toxin

1 reference

12 December 2020

Water-mediated conformational transitions in nicotinic receptor M2 helix bundles: a molecular dynamics study.

1 reference

12 December 2020

High-resolution 1H NMR study of the solution structure of alamethicin

1 reference

12 December 2020

Kinked structures of isolated nicotinic receptor M2 helices: a molecular dynamics study

1 reference

12 December 2020

Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban

1 reference

12 December 2020

Bundles of amphipathic transmembrane alpha-helices as a structural motif for ion-conducting channel proteins: studies on sodium channels and acetylcholine receptors

1 reference

12 December 2020

Structural model of the phospholamban ion channel complex in phospholipid membranes

1 reference

12 December 2020

High-resolution proton NMR study of the solution structure of .delta.-hemolysin

1 reference

12 December 2020

Modelling membrane proteins using structural restraints

1 reference

12 December 2020

Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices

1 reference

12 December 2020

10.1016/S0006-3495(96)79727-8

Identifiers

DOI

1 reference

15 October 2017

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15 October 2017

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