GenePattern flow cytometry suite (Q30177554)

13

object named as

Rafick-Pierre Sekaly

0 references

Richard H. Scheuermann

12

object named as

Richard H Scheuermann

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author name string

Josef Spidlen

1

0 references

Aaron Barsky

2

0 references

Karin Breuer

3

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Peter Carr

4

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Marc-Danie Nazaire

5

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Barbara Allen Hill

6

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Yu Qian

7

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Ted Liefeld

8

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Michael Reich

9

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Peter Wilkinson

11

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Ryan R Brinkman

Source Code for Biology and Medicine

14

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language of work or name

English

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publication date

3 July 2013

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published in

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volume

8

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issue

1

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page(s)

14

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cites work

Update for the logicle data scale including operational code implementations

1 reference

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Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Rapid cell population identification in flow cytometry data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Data reduction for spectral clustering to analyze high throughput flow cytometry data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Data analysis in flow cytometry: the future just started

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

The curvHDR method for gating flow cytometry samples.

3 June 2018

1 reference

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Computer science. Accessible reproducible research

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

A survey of flow cytometry data analysis methods

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Merging mixture components for cell population identification in flow cytometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Analysis of High-Throughput Flow Cytometry Data Using plateCore

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Data File Standard for Flow Cytometry, version FCS 3.1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Per-channel basis normalization methods for flow cytometry data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Automated high-dimensional flow cytometric data analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

flowClust: a Bioconductor package for automated gating of flow cytometry data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

flowCore: a Bioconductor package for high throughput flow cytometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Gating-ML: XML-based gating descriptions in flow cytometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Mixture modeling approach to flow cytometry data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Long-term propagation of distinct hematopoietic differentiation programs in vivo

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

High-content single-cell drug screening with phosphospecific flow cytometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Optimizing a multicolor immunophenotyping assay

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Multifunctional TH1 cells define a correlate of vaccine-mediated protection against Leishmania major

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Data quality assessment of ungated flow cytometry data in high throughput experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

A new "Logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Hyperlog-a flexible log-like transform for negative, zero, and positive valued data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Bioconductor: open software development for computational biology and bioinformatics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Cytometry of the cell cycle: cycling through history

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Beyond six colors: a new era in flow cytometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Frequency difference gating: a multivariate method for identifying subsets that differ between samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Cluster analysis of flow cytometric list mode data on a personal computer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Sequential univariate gating approach to study the effects of erythropoietin in murine bone marrow

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3717030

Quantitative evaluation of T-cell response after specific antigen stimulation in active and latent tuberculosis infection in adults and children

26 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1751-0473-8-14

journals/scfbm/SpidlenBBCNHQLRMWSSB13

21 January 2018

Identifiers

DOI

10.1186/1751-0473-8-14

0 references

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02