Identification of indels in next-generation sequencing data (Q30300184)

13 October 2017

Identification of indels in next-generation sequencing data (English)

1 reference

13 October 2017

1

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Webb Miller

series ordinal

4

object named as

Webb Miller

1 reference

13 October 2017

Thomas L Olson

2

1 reference

PMCID

4339746

13 October 2017

Thomas P Loughran

series ordinal

3

1 reference

13 October 2017

13 February 2015

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13 October 2017

1 reference

13 October 2017

16

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13 October 2017

42

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Creative Commons Attribution 4.0 International

13 October 2017

start time

13 February 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1186/s12859-015-0483-6

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cites work

Comparison of sequencing platforms for single nucleotide variant calls in a human sample

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

SOAPindel: efficient identification of indels from short paired reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Sequence analysis of mutations and translocations across breast cancer subtypes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Detecting and annotating genetic variations using the HugeSeq pipeline

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Natural genetic variation caused by small insertions and deletions in the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Dindel: accurate indel calls from short-read data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Small insertions and deletions (INDELs) in human genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

The Sequence Alignment/Map format and SAMtools

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Fast and accurate short read alignment with Burrows-Wheeler transform

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Accurate whole human genome sequencing using reversible terminator chemistry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Mapping and sequencing of structural variation from eight human genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

The diploid genome sequence of an individual human

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Leukemia of large granular lymphocytes: association with clonal chromosomal abnormalities and autoimmune neutropenia, thrombocytopenia, and hemolytic anemia

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Aligning two sequences within a specified diagonal band

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0483-6

pIRS: Profile-based Illumina pair-end reads simulator

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0483-6

The Human Gene Mutation Database (HGMD) and its exploitation in the fields of personalized genomics and molecular evolution

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4339746

Large granular lymphocyte leukemia

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25879703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-015-0483-6

1 reference

journals/bmcbi/RatanOLM15

13 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

13 October 2017

1 reference

PMCID

4339746