Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction (Q30327075)

13 October 2017

Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction (English)

1 reference

protein structure prediction

13 October 2017

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2

Levitt M

1 reference

13 October 2017

Samudrala R

1

1 reference

13 October 2017

1 July 2000

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13 October 2017

1 reference

13 October 2017

9

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13 October 2017

7

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13 October 2017

1399-1401

1 reference

Ab initio protein structure prediction using a combined hierarchical approach.

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Ab initio protein structure prediction of CASP III targets using ROSETTA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Are predicted structures good enough to preserve functional sites?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Discriminating compact nonnative structures from the native structure of globular proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

An analysis of incorrectly folded protein models. Implications for structure predictions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Evaluation of protein models by atomic solvation preference.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144680

Using a hydrophobic contact potential to evaluate native and near-native folds generated by molecular dynamics simulations

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10933507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10933507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10933507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1110/PS.9.7.1399

1 reference

13 October 2017

1 reference

PMC publication ID

2144680

13 October 2017

PubMed publication ID

10933507

1 reference

PMC publication ID

2144680