TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints. (Q30328552)

9 September 2017

TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints. (English)

1 reference

protein structure prediction

9 September 2017

0 references

D Kihara

1

0 references

Hui Lu

object named as

H Lu

series ordinal

2

0 references

Andrzej Koliński

object named as

A Kolinski

series ordinal

3

0 references

author name string

J Skolnick

series ordinal

4

1 reference

PMC publication ID

56926

9 September 2017

language of work or name

English

0 references

publication date

14 August 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

9 September 2017

1 reference

9 September 2017

98

1 reference

9 September 2017

18

1 reference

9 September 2017

10125-10130

1 reference

A distance-dependent atomic knowledge-based potential for improved protein structure selection.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Prospects for ab initio protein structural genomics.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Recent improvements in prediction of protein structure by global optimization of a potential energy function.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Protein secondary structure prediction based on position-specific scoring matrices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Evaluation of comparative protein structure modeling by MODELLER-3.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

CATH--a hierarchic classification of protein domain structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Novel methods of sampling phase space in the simulation of biological systems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Improved prediction of protein secondary structure by use of sequence profiles and neural networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Global Fold Determination from a Small Number of Distance Restraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56926

Combination of threading potentials and sequence profiles improves fold recognition.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.181328398

Replica Monte Carlo simulation of spin glasses.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.181328398

BioMolQuest: integrated database-based retrieval of protein structural and functional information.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.181328398

Derivation of protein-specific pair potentials based on weak sequence fragment similarity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11504922

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.181328398

1 reference

9 September 2017

0 references

1 reference

PMC publication ID

56926

9 September 2017

PubMed publication ID

11504922

1 reference

PMC publication ID

56926