Evolutionary predictions of binding surfaces and interactions. (Q30329608)

18 June 2017

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title

Evolutionary predictions of binding surfaces and interactions. (English)

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18 June 2017

1

Olivier Lichtarge

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18 June 2017

Mathew E Sowa

2

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18 June 2017

1 February 2002

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Current Opinion in Structural Biology

18 June 2017

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18 June 2017

12

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18 June 2017

1

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18 June 2017

21-27

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Evolutionary traces of functional surfaces along G protein signaling pathway.

18 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Prediction and confirmation of a site critical for effector regulation of RGS domain activity

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

From genome to function

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Theory of biomolecular recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Structural mimicry in bacterial virulence

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Three-dimensional profiles: a new tool to identify protein surface similarities.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

1 reference

7 January 2021

Hidden Markov models in computational biology. Applications to protein modeling

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Profile hidden Markov models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Errors in genome annotation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Effective use of sequence correlation and conservation in fold recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Evolution of function in protein superfamilies, from a structural perspective.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Supersites within superfolds. Binding site similarity in the absence of homology

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Electrostatic aspects of protein-protein interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

A geometric approach to macromolecule-ligand interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Protein surface roughness and small molecular binding sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Analysis of protein-protein interaction sites using surface patches

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Anatomy of hot spots in protein interfaces

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

A hot spot of binding energy in a hormone-receptor interface

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Evolutionarily conserved pathways of energetic connectivity in protein families

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https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Structural plasticity in a remodeled protein-protein interface

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https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

The atomic structure of protein-protein recognition sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Structural features of protein-nucleic acid recognition sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Protein-DNA interactions: A structural analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Protein-RNA interactions: a structural analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Analysis and prediction of carbohydrate binding sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Analysis of heregulin symmetry by weighted evolutionary tracing

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Analysis and prediction of functional sub-types from protein sequence alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Identification of functional surfaces of the zinc binding domains of intracellular receptors

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

A regulator of G protein signaling interaction surface linked to effector specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Receptor and betagamma binding sites in the alpha subunit of the retinal G protein transducin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Structural determinants for regulation of phosphodiesterase by a G protein at 2.0 A

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Evolutionary trace analysis of the Kunitz/BPTI family of proteins: functional divergence may have been based on conformational adjustment 1 1Edited by F. Cohen

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Database verification studies of SWISS-PROT and GenBank

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Evolution, language and analogy in functional genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

Dimerization of G-protein-coupled receptors.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900284-1

7 January 2021

10.1016/S0959-440X(02)00284-1

Identifiers

DOI

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18 June 2017

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PubMed ID

11839485