Contact order and ab initio protein structure prediction (Q30331234)

1 September 2017

Contact order and ab initio protein structure prediction (English)

1 reference

protein structure prediction

1 September 2017

0 references

0 references

David Baker

4

0 references

Richard Bonneau

series ordinal

1

object named as

Richard Bonneau

1 reference

1 September 2017

Ingo Ruczinski

2

1 reference

PMCID

2373674

1 September 2017

Jerry Tsai

series ordinal

3

1 reference

1 September 2017

1 August 2002

1 reference

1 September 2017

1 reference

1 September 2017

11

1 reference

1 September 2017

8

1 reference

1 September 2017

1937-1944

1 reference

Distributions of beta sheets in proteins with application to structure prediction.

1 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Rosetta in CASP4: progress in ab initio protein structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Functional inferences from blind ab initio protein structure predictions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Prospects for ab initio protein structural genomics.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

De novo protein structure determination using sparse NMR data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Mechanisms of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

MaxSub: an automated measure for the assessment of protein structure prediction quality.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Ab initio protein structure prediction of CASP III targets using ROSETTA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

A combined approach for ab initio construction of low resolution protein tertiary structures from sequence.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Is protein folding hierarchic? II. Folding intermediates and transition states

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Cryo-electron microscopy structure of an SH3 amyloid fibril and model of the molecular packing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Clustering of low-energy conformations near the native structures of small proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Contact order, transition state placement and the refolding rates of single domain proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Protein folding simulations with genetic algorithms and a detailed molecular description

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

Selection of representative protein data sets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373674

How do small single-domain proteins fold?

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1110%2FPS.3790102

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12142448

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12142448

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1110/PS.3790102

1 reference

1 September 2017

1 reference

1 September 2017

1 reference

PMCID

2373674