Water in protein structure prediction (Q30339048)

18 August 2017

Water in protein structure prediction (English)

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protein structure prediction

18 August 2017

0 references

5

Peter G Wolynes

1 reference

PMCID

373465

18 August 2017

Zaida Luthey-Schulten

series ordinal

4

object named as

Zaida Luthey-Schulten

1 reference

18 August 2017

1

Garegin A Papoian

1 reference

18 August 2017

2

Johan Ulander

1 reference

18 August 2017

Michael P Eastwood

3

1 reference

PMCID

373465

18 August 2017

language of work or name

English

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publication date

26 February 2004

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Proceedings of the National Academy of Sciences of the United States of America

18 August 2017

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18 August 2017

101

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18 August 2017

10

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18 August 2017

3352-3357

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Some factors in the interpretation of protein denaturation

18 August 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

3 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Minimalist models for protein folding and design

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

The structure of an FF domain from human HYPA/FBP11

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Ab initio protein structure prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Folding funnels: the key to robust protein structure prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Protein threading by learning

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Associative memory hamiltonians for structure prediction without homology: alpha-helical proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Structure classification-based assessment of CASP3 predictions for the fold recognition targets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Global optimization of clusters, crystals, and biomolecules.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

NMR structure of the N-terminal domain of E. coli DnaB helicase: implications for structure rearrangements in the helicase hexamer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Evidence for microscopic, long-range hydration forces for a hydrophobic amino acid

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Crystal structure of Escherichia coli HdeA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Self-consistently optimized energy functions for protein structure prediction by molecular dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

A method for the prediction of surface "U"-turns and transglobular connections in small proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

The hydrophobic moment detects periodicity in protein hydrophobicity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Spin glasses and the statistical mechanics of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Protein design, a minimalist approach.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Solving the structure of human H ferritin by genetically engineering intermolecular crystal contacts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373465

Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

The physics and bioinformatics of binding and folding-an energy landscape perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Role of water mediated interactions in protein-protein recognition landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Toward protein tertiary structure recognition by means of associative memory hamiltonians.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

A computational approach to simplifying the protein folding alphabet.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

New perspectives on hydrophobic effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Statistical mechanical refinement of protein structure prediction schemes. II. Mayer cluster expansion approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

Statistical mechanical refinement of protein structure prediction schemes: Cumulant expansion approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307851100

21 January 2018

Identifiers

DOI

10.1073/PNAS.0307851100

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference

PMCID

373465