Multiple flexible structure alignment using partial order graphs. (Q30350312)

20 June 2017

Multiple flexible structure alignment using partial order graphs. (English)

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20 June 2017

2

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20 June 2017

Yuzhen Ye

1

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PubMed ID

15746292

20 June 2017

language of work or name

English

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publication date

3 March 2005

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20 June 2017

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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20 June 2017

21

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10

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2362-2369

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SCOP database in 2004: refinements integrate structure and sequence family data

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Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins

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Molecular and structural basis of target recognition by calmodulin.

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Multiple structural alignment by secondary structures: algorithm and applications

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The structural alignment between two proteins: is there a unique answer?

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Multiple sequence alignment: algorithms and applications

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Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems

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Approximate protein structural alignment in polynomial time

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A General Theory of Classificatory Sorting Strategies: 1. Hierarchical Systems

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Multiple sequence alignment using partial order graphs

21 January 2018

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Automated multiple structure alignment and detection of a common substructural motif

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MUSTA--a general, efficient, automated method for multiple structure alignment and detection of common motifs: application to proteins

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HOMSTRAD: a database of protein structure alignments for homologous families

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Progressive combinatorial algorithm for multiple structural alignments: application to distantly related proteins

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On the evolution of structure in aminoacyl-tRNA synthetases

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A novel method for multiple alignment of sequences with repeated and shuffled elements

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Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

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Flexible protein alignment and hinge detection

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A method for simultaneous alignment of multiple protein structures

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

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Conformational movements and cooperativity upon amino acid, ATP and tRNA binding in threonyl-tRNA synthetase

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1 reference

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Flexible structure alignment by chaining aligned fragment pairs allowing twists

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1 reference

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Database searching by flexible protein structure alignment.

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A segment alignment approach to protein comparison.

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10.1093/BIOINFORMATICS/BTI353

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/YeG05

20 June 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

15746292