An integrated platform for automated analysis of protein NMR structures. (Q30350474)

20 June 2017

An integrated platform for automated analysis of protein NMR structures. (English)

1 reference

20 June 2017

0 references

7

0 references

Roberto Tejero

object named as

Roberto Tejero

6

0 references

Cheryl Arrowsmith

object named as

Cheryl Arrowsmith

4

0 references

Gaetano T. Montelione

8

object named as

Gaetano T Montelione

1 reference

20 June 2017

2

Hunter N B Moseley

1 reference

20 June 2017

Yuanpeng Janet Huang

1

1 reference

20 June 2017

Michael C Baran

3

1 reference

20 June 2017

Robert Powers

5

1 reference

20 June 2017

language of work or name

English

0 references

publication date

1 January 2005

1 reference

20 June 2017

Methods in Enzymology

1 reference

20 June 2017

394

1 reference

20 June 2017

111-141

1 reference

Protein sequential resonance assignments by combinatorial enumeration using 13C alpha chemical shifts and their (i, i-1) sequential connectivities

20 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

A Metropolis Monte Carlo implementation of bayesian time-domain parameter estimation: application to coupling constant estimation from antiphase multiplets.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Solution NMR structure of the 30S ribosomal protein S28E fromPyrococcus horikoshii

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

A tracked approach for automated NMR assignments in proteins (TATAPRO).

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

SPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated analysis of protein NMR assignments and structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated sequence-specific NMR assignment of homologous proteins using the program GARANT.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

GARANT-a general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra. Computation of sterically allowed proton-proton distances and statistical analysis of proton-proton distances in single crystal protein conformations.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Protein heteronuclear NMR assignments using mean-field simulated annealing.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Structural genomics: A pipeline for providing structures for the biologist

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Principles that determine the structure of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Helix to helix packing in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

High-resolution structure of the oligomerization domain of p53 by multidimensional NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

PACES: Protein sequential assignment by computer-assisted exhaustive search.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Analysis and prediction of the packing of alpha-helices against a beta-sheet in the tertiary structure of globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Efficient analysis of protein 2D NMR spectra using the software packageEASY

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

VERIFY3D: assessment of protein models with three-dimensional profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

The CCPN project: an interim report on a data model for the NMR community

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Global Folds of Highly Deuterated, Methyl-Protonated Proteins by Multidimensional NMR†

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Structural genomics efforts at the Chinese Academy of Sciences and Peking University

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Solution NMR structure and folding dynamics of the N terminus of a rat non-muscle alpha-tropomyosin in an engineered chimeric protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

The structure of the carboxyl terminus of striated alpha-tropomyosin in solution reveals an unusual parallel arrangement of interacting alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

CLOUDS, a protocol for deriving a molecular proton density via NMR.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

CAMRA: chemical shift based computer aided protein NMR assignments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

RFAC, a program for automated NMR R-factor estimation.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated assignment of NOESY NMR spectra using a knowledge based method (KNOWNOE)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Correlation of Backbone Amide and Aliphatic Side-Chain Resonances in 13C/15N-Enriched Proteins by Isotropic Mixing of 13C Magnetization

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

A Spin System Labeled and Highly Resolved ed-H(CCO)NH-TOCSY Experiment for the Facilitated Assignment of Proton Side Chains in Partially Deuterated Samples.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Processing of multi-dimensional NMR data with the new software PROSA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

An integrated approach to structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Packing of alpha-helices onto beta-pleated sheets and the anatomy of alpha/beta proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Proton-proton correlation via carbon-carbon couplings: a three-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with carbon-13

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Role for NMR in structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Completely automated, highly error-tolerant macromolecular structure determination from multidimensional nuclear overhauser enhancement spectra and chemical shift assignments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated backbone assignment of labeled proteins using the threshold accepting algorithm.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated resonance assignment of proteins using heteronuclear 3D NMR. 2. Side chain and sequence-specific assignment.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Efficient side-chain and backbone assignment in large proteins: application to tGCN5

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Side chain and backbone assignments in isotopically labeled proteins from two heteronuclear triple resonance experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated probabilistic method for assigning backbone resonances of (13C,15N)-labeled proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

The solution structure of the pH-induced monomer of dynein light-chain LC8 from Drosophila

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Fully automated sequence-specific resonance assignments of hetero- nuclear protein spectra.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Rapid analysis of protein backbone resonance assignments using cryogenic probes, a distributed Linux-based computing architecture, and an integrated set of spectral analysis tools

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated analysis of NMR assignments and structures for proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Assignment validation software suite for the evaluation and presentation of protein resonance assignment data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

High-resolution solution structure of basic fibroblast growth factor determined by multidimensional heteronuclear magnetic resonance spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated assignment of simulated and experimental NOESY spectra of proteins by feedback filtering and self-correcting distance geometry

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated combined assignment of NOESY spectra and three-dimensional protein structure determination

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE crosspeaks and disulphide connectivities.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

MUNIN: a new approach to multi-dimensional NMR spectra interpretation.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Solution structure ofVibrio choleraeprotein VC0424: A variation of the ferredoxin-like fold

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

The Xplor-NIH NMR molecular structure determination package

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

A relational database for sequence-specific protein NMR data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Reduced dimensionality in triple-resonance NMR experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

HYPER: a hierarchical algorithm for automatic determination of protein dihedral-angle constraints and stereospecific C beta H2 resonance assignments from NMR data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Structural genomics in North America.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

WHAT IF: a molecular modeling and drug design program

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Validation of protein structures for protein data bank

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

1H, 13C and 15N chemical shift referencing in biomolecular NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Exploring steric constraints on protein mutations using MAGE/PROBE

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

1 reference

7 January 2021

RefDB: a database of uniformly referenced protein chemical shifts

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated protein fold determination using a minimal NMR constraint strategy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

A NOESY-HSQC simulation program, SPIRIT

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Three-Dimensional Structures of Acidic and Basic Fibroblast Growth Factors

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated analysis of nuclear magnetic resonance assignments for proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated sequencing of amino acid spin systems in proteins using multidimensional HCC(CO)NH-TOCSY spectroscopy and constraint propagation methods from artificial intelligence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Automated analysis of protein NMR assignments using methods from artificial intelligence.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Project management system for structural and functional proteomics: Sesame

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra. Basic pancreatic trypsin inhibitor

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994005-6

7 January 2021

10.1016/S0076-6879(05)94005-6

Identifiers

DOI

1 reference

20 June 2017

1 reference