Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information. (Q30353319)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16526956%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16526956%20AND%20SRC:MED&resulttype=core&format=json

protein structure prediction

17 January 2020

main subject

0 references

author

Kevin Burrage

2

1 reference

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17 January 2020

Jiangning Song

1

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17 January 2020

author name string

Zheng Yuan

3

1 reference

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17 January 2020

Thomas Huber

4

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17 January 2020

publication date

9 March 2006

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17 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16526956%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

volume

7

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17 January 2020

page(s)

124

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Better prediction of protein contact number using a support vector regression analysis of amino acid sequence

17 January 2020

cites work

1 reference

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20 June 2018

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20 June 2018

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20 June 2018

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Statistically significant dependence of the Xaa-Pro peptide bond conformation on secondary structure and amino acid sequence

20 June 2018

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Improved method for predicting beta-turn using support vector machine

20 June 2018

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PSSM-based prediction of DNA binding sites in proteins

20 June 2018

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Conservation of cis prolyl bonds in proteins during evolution.

20 June 2018

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Esub8: a novel tool to predict protein subcellular localizations in eukaryotic organisms

20 June 2018

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Data mining in bioinformatics using Weka

20 June 2018

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Prediction of alpha-turns in proteins using PSI-BLAST profiles and secondary structure information.

20 June 2018

1 reference

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Support vector machines for prediction of peptidyl prolyl cis/trans isomerization

20 June 2018

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Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data

20 June 2018

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Native state proline isomerization: an intrinsic molecular switch

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Cis-trans isomerization of organic molecules and biomolecules: implications and applications

20 June 2018

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Knowledge-based analysis of microarray gene expression data by using support vector machines

20 June 2018

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Protein secondary structure prediction based on position-specific scoring matrices

20 June 2018

1 reference

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20 June 2018

Peptide bonds revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

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Prolyl isomerases: role in protein folding.

20 June 2018

1 reference

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Occurrence and role of cis peptide bonds in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Errors in three dimensions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Signal detectability: the use of ROC curves and their analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Predicting protein secondary structure and solvent accessibility with an improved multiple linear regression method.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Prolyl isomerization as a molecular timer in phage infection

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Prediction of protein B-factor profiles.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Improved prediction of protein-protein binding sites using a support vector machines approach

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Cis-trans isomerization and puckering of proline residue

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

A neural network method for prediction of beta-turn types in proteins using evolutionary information.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

A novel method for protein secondary structure prediction using dual-layer SVM and profiles.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Proline cis-trans isomerization and protein folding

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

A cis-prolyl peptide bond isomerization dominates the folding of the alpha subunit of Trp synthase, a TIM barrel protein

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Prediction of protein solvent accessibility using support vector machines.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Local structural changes caused by peptidyl-prolyl cis/trans isomerization in the native state of proteins

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Support vector machine approach for protein subcellular localization prediction

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Non-proline cis peptide bonds in proteins.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Side-chain effects on peptidyl-prolyl cis/trans isomerisation.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450308

Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16526956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prediction of prolyl residues incis-conformation in protein structures on the basis of the amino acid sequence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16526956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

COPS--cis/trans peptide bond conformation prediction of amino acids on the basis of secondary structure information

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16526956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-124

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16526956%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

DBLP publication ID

journals/bmcbi/SongBYH06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16526956%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

16526956

1 reference