GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity. (Q30358085)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24443377%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

title

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity (English)

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5 March 2020

1

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5 March 2020

Nataša Pržulj

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24443377%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

author name string

Noël Malod-Dognin

series ordinal

1

1 reference

20 June 2017

language of work or name

English

0 references

publication date

17 January 2014

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24443377%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

number of pages

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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5 March 2020

volume

30

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5 March 2020

page(s)

1259-1265

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5 March 2020

issue

9

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Fast molecular shape matching using contact maps.

5 March 2020

cites work

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Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.

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Fast overlapping of protein contact maps by alignment of eigenvectors

21 January 2018

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Striped Smith-Waterman speeds database searches six times over other SIMD implementations

21 January 2018

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21 January 2018

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21 January 2018

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The structural alignment between two proteins: is there a unique answer?

21 January 2018

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Advances and pitfalls of protein structural alignment

21 January 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

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Protein structure comparison by alignment of distance matrices

21 January 2018

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Integrative network alignment reveals large regions of global network similarity in yeast and human

21 January 2018

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CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units

21 January 2018

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Comparative analysis of protein structure alignments

21 January 2018

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Matt: local flexibility aids protein multiple structure alignment.

21 January 2018

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Optimal network alignment with graphlet degree vectors

21 January 2018

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 January 2018

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

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A simple and fast heuristic for protein structure comparison.

21 January 2018

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Biological network comparison using graphlet degree distribution

21 January 2018

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Modeling interactome: scale-free or geometric?

21 January 2018

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A spectral approach to protein structure alignment

21 January 2018

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Identification of common molecular subsequences

21 January 2018

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A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval.

21 January 2018

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Novel aspects of calmodulin target recognition and activation

21 January 2018

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A reduction-based exact algorithm for the contact map overlap problem.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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10.1093/BIOINFORMATICS/BTU020

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24443377%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/Malod-DogninP14

5 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24443377%20AND%20SRC:MED&resulttype=core&format=json