PROMALS: towards accurate multiple sequence alignments of distantly related proteins. (Q30359563)

20 June 2017

PROMALS: towards accurate multiple sequence alignments of distantly related proteins. (English)

1 reference

20 June 2017

1 reference

2

Nick V Grishin

1 reference

20 June 2017

Jimin Pei

1

1 reference

PubMed ID

17267437

20 June 2017

language of work or name

English

0 references

publication date

31 January 2007

1 reference

20 June 2017

1 reference

20 June 2017

23

1 reference

20 June 2017

7

1 reference

20 June 2017

802-808

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

ProbCons: Probabilistic consistency-based multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Profile hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Multiple sequence alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Detection of reliable and unexpected protein fold predictions using 3D-Jury

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Dictionary of recurrent domains in protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Touring protein fold space with Dali/FSSP

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

A tool for multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

How far divergent evolution goes in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

3DCoffee: combining protein sequences and structures within multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

AL2CO: calculation of positional conservation in a protein sequence alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

PCMA: fast and accurate multiple sequence alignment based on profile consistency.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Multiple sequence alignment in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

LiveBench-6: large-scale automated evaluation of protein structure prediction servers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

PSIC: profile extraction from sequence alignments with position-specific counts of independent observations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

A comprehensive comparison of multiple sequence alignment programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Scoring profile-to-profile sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

The Universal Protein Resource (UniProt): an expanding universe of protein information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM017

10.1093/BIOINFORMATICS/BTM017

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/PeiG07

20 June 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

17267437