The GCN4 bZIP targets noncognate gene regulatory sequences: quantitative investigation of binding at full and half sites. (Q30359665)

15 August 2017

The GCN4 bZIP targets noncognate gene regulatory sequences: quantitative investigation of binding at full and half sites. (English)

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15 August 2017

I-San Chan

1

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15 August 2017

Anna V Fedorova

series ordinal

2

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15 August 2017

Jumi A Shin

series ordinal

3

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15 August 2017

language of work or name

English

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publication date

1 February 2007

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15 August 2017

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15 August 2017

46

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15 August 2017

6

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15 August 2017

1663-1671

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describes a project that uses

15 August 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2435288/fullTextXML

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cites work

The GCN4 bZIP can bind to noncognate gene regulatory sequences

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How do site-specific DNA-binding proteins find their targets?

3 June 2018

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Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network

3 June 2018

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Oxygen-dependent regulation of hypoxia-inducible factors by prolyl and asparaginyl hydroxylation

3 June 2018

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X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors

3 June 2018

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Sequence-specific recognition of DNA by hydrophobic, alanine-rich mutants of the basic region/leucine zipper motif investigated by fluorescence anisotropy

3 June 2018

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Definition and prediction of the full range of transcription factor binding sites--the hepatocyte nuclear factor 1 dimeric site

3 June 2018

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MALDI-TOF mass spectrometry characterization of recombinant hydrophobic mutants containing the GCN4 basic region/leucine zipper motif.

3 June 2018

1 reference

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Rapid screening for improved solubility of small human proteins produced as fusion proteins in Escherichia coli

3 June 2018

1 reference

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GCN4 binds with high affinity to DNA sequences containing a single consensus half-site

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Gene-target recognition among members of the myc superfamily and implications for oncogenesis

3 June 2018

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DNA specificity enhanced by sequential binding of protein monomers.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Specificity of DNA binding of the c-Myc/Max and ARNT/ARNT dimers at the CACGTG recognition site

3 June 2018

1 reference

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MYC oncogenes and human neoplastic disease

3 June 2018

1 reference

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Functional interference between hypoxia and dioxin signal transduction pathways: competition for recruitment of the Arnt transcription factor

3 June 2018

1 reference

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Ligand-dependent recruitment of the Arnt coregulator determines DNA recognition by the dioxin receptor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Mechanism of dioxin action: receptor-enhancer interactions in intact cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Double-stranded DNA templates can induce alpha-helical conformation in peptides containing lysine and alanine: functional implications for leucine zipper and helix-loop-helix transcription factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Myc-Max-Mad: a transcription factor network controlling cell cycle progression, differentiation and death

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Orientation of the heterodimeric aryl hydrocarbon (dioxin) receptor complex on its asymmetric DNA recognition sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Determination of the helix and beta form of proteins in aqueous solution by circular dichroism.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Characterization of xenobiotic responsive elements upstream from the drug-metabolizing cytochrome P-450c gene: a similarity to glucocorticoid regulatory elements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Facilitated target location in biological systems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Cognate DNA binding specificity retained after leucine zipper exchange between GCN4 and C/EBP.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Design of DNA-binding peptides based on the leucine zipper motif

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Role of the ligand in intracellular receptor function: receptor affinity determines activation in vitro of the latent dioxin receptor to a DNA-binding form

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Cloning of a Factor Required for Activity of the Ah (Dioxin) Receptor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Cloning of the Ah-receptor cDNA reveals a distinctive ligand-activated transcription factor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Identification of the Ah Receptor Nuclear Translocator Protein (Arnt) as a Component of the DNA Binding Form of the Ah Receptor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

cDNA cloning and structure of mouse putative Ah receptor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Monomeric and dimeric bZIP transcription factor GCN4 bind at the same rate to their target DNA site

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435288

Temperature dependence of intramolecular dynamics of the basic leucine zipper of GCN4: implications for the entropy of association with DNA

26 November 2018

1 reference

12 December 2020

Kinetic Studies of Fos·Jun·DNA Complex Formation: DNA Binding Prior to Dimerization†

1 reference

12 December 2020

Changing the binding specificity of a repressor by redesigning an alpha-helix

1 reference

12 December 2020

Folding transition in the DMA-binding domain of GCN4 on specific binding to DNA

1 reference

12 December 2020

DNA-induced increase in the .alpha.-helical content of C/EBP and GCN4

1 reference

12 December 2020

Binding of Cationic (+4) Alanine- and Glycine-Containing Oligopeptides to Double-Stranded DNA: Thermodynamic Analysis of Effects of Coulombic Interactions and α-Helix Induction†

1 reference

12 December 2020

Distribution of labor among bZIP segments in the control of DNA affinity and specificity

1 reference

12 December 2020

Acceleration of the refolding of Arc repressor by nucleic acids and other polyanions

1 reference

12 December 2020

Diffusion-controlled DNA recognition by an unfolded, monomeric bZIP transcription factor

1 reference

12 December 2020

Short, hydrophobic, alanine-based proteins based on the basic region/leucine zipper protein motif: overcoming inclusion body formation and protein aggregation during overexpression, purification, and renaturation

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI0617613

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

17279629

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