Molecular dynamics simulation of deoxy and carboxy murine neuroglobin in water. (Q30361353)

14 October 2017

Molecular dynamics simulation of deoxy and carboxy murine neuroglobin in water. (English)

1 reference

molecular dynamics simulation

14 October 2017

0 references

author

Maurizio Brunori

2

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Massimiliano Anselmi

object named as

Massimiliano Anselmi

1

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Beatrice Vallone

object named as

Beatrice Vallone

3

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Alfredo Di Nola

4

object named as

Alfredo Di Nola

1 reference

PMC publication ID

1896225

14 October 2017

language of work or name

English

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publication date

27 April 2007

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14 October 2017

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14 October 2017

93

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14 October 2017

2

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14 October 2017

434-441

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14 October 2017

A globin for the brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Modeling of ligation-induced helix/loop displacements in myoglobin: toward an understanding of hemoglobin allostery.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Extended subnanosecond structural dynamics of myoglobin revealed by Laue crystallography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Neuroglobin, nitric oxide, and oxygen: functional pathways and conformational changes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Molecular dynamics simulation of sperm whale myoglobin: effects of mutations and trapped CO on the structure and dynamics of cavities

3 June 2018

1 reference

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The structure of carbonmonoxy neuroglobin reveals a heme-sliding mechanism for control of ligand affinity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Extended molecular dynamics simulation of the carbon monoxide migration in sperm whale myoglobin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

The structure of murine neuroglobin: Novel pathways for ligand migration and binding

3 June 2018

1 reference

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Human brain neuroglobin structure reveals a distinct mode of controlling oxygen affinity

3 June 2018

1 reference

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Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography

3 June 2018

1 reference

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Neuroglobin protects the brain from experimental stroke in vivo

3 June 2018

1 reference

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Ligand binding and protein dynamics in neuroglobin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

New insights into the allosteric mechanism of human hemoglobin from molecular dynamics simulations

3 June 2018

1 reference

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Neuroglobin is up-regulated by and protects neurons from hypoxic-ischemic injury

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Protein conformational relaxation and ligand migration in myoglobin: a nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction

3 June 2018

1 reference

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The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

A vertebrate globin expressed in the brain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Computer simulations of carbon monoxide photodissociation in myoglobin: structural interpretation of the B states.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Essential dynamics of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Identification of residues in human neuroglobin crucial for Guanine nucleotide dissociation inhibitor activity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Structural dynamics in the active site of murine neuroglobin and its effects on ligand binding

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Oxidized human neuroglobin acts as a heterotrimeric Galpha protein guanine nucleotide dissociation inhibitor

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Solution 1h NMR characterization of equilibrium heme orientational disorder with functional consequences in mouse neuroglobin

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Watching a protein as it functions with 150-ps time-resolved x-ray crystallography

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Biochemical characterization and ligand binding properties of neuroglobin, a novel member of the globin family.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Human neuroglobin, a hexacoordinate hemoglobin that reversibly binds oxygen

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Mapping the pathways for O2 entry into and exit from myoglobin.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

A comparison between molecular dynamics and X-ray results for dissociated CO in myoglobin.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896225

Nitric Oxide Binding Properties of Neuroglobin

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17468165

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An x-ray study of azide methaemoglobin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17468165

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mechanism of ligand binding to Ni(II)-Fe(II) hybrid hemoglobins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17468165

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.106.099648

1 reference

14 October 2017

1 reference

PMC publication ID

1896225

14 October 2017

PubMed publication ID

17468165

1 reference

PMC publication ID

1896225