NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures (Q30361425)

16 October 2017

NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures (English)

1 reference

16 October 2017

1 reference

Christian X Weichenberger

series ordinal

1

1 reference

PMCID

1933125

16 October 2017

Manfred J Sippl

series ordinal

2

1 reference

PMCID

1933125

16 October 2017

language of work or name

English

0 references

publication date

3 May 2007

1 reference

16 October 2017

Nucleic Acids Research

1 reference

16 October 2017

35

1 reference

16 October 2017

Web Server issue

1 reference

16 October 2017

W403-6

1 reference

Self-consistent assignment of asparagine and glutamine amide rotamers in protein crystal structures.

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Analysis of human tyrosyl-DNA phosphodiesterase I catalytic residues

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

X-ray structures of the maltose-maltodextrin-binding protein of the thermoacidophilic bacterium Alicyclobacillus acidocaldarius provide insight into acid stability of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

The crystal structure of a novel, inactive, lysine 49 PLA2 from Agkistrodon acutus venom: an ultrahigh resolution, AB initio structure determination

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Structural basis for oligosaccharide recognition by Pyrococcus furiosus maltodextrin-binding protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Errors in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Heparin structure and interactions with basic fibroblast growth factor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

New domain motif: the structure of pectate lyase C, a secreted plant virulence factor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

NQ-Flipper: validation and correction of asparagine/glutamine amide rotamers in protein crystal structures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

The application of hydrogen bonding analysis in X-ray crystallography to help orientate asparagine, glutamine and histidine side chains

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933125

Structural and Functional Roles of Asparagine 175 in the Cysteine Protease Papain

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17478502

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Helmholtz free energy of peptide hydrogen bonds in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17478502

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Helmholtz free energies of atom pair interactions in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17478502

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM263

1 reference

journals/nar/WeichenbergerS07

16 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

1 reference

PMCID

1933125