KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies. (Q30362931)

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English	KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.	scientific article

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scholarly article

1 reference

Europe PubMed Central

20 June 2017

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies. (English)

1 reference

Europe PubMed Central

20 June 2017

object named as

Junji Iwahara

2

0 references

Shigeyuki Yokoyama

object named as

Shigeyuki Yokoyama

8

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object named as

Peter Güntert

6

0 references

Naohiro Kobayashi

1

object named as

Naohiro Kobayashi

1 reference

Europe PubMed Central

20 June 2017

3

object named as

Seizo Koshiba

1 reference

Europe PubMed Central

20 June 2017

5

object named as

Naoya Tochio

1 reference

Europe PubMed Central

20 June 2017

Takanori Kigawa

7

object named as

Takanori Kigawa

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Europe PubMed Central

20 June 2017

author name string

Tadashi Tomizawa

4

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Europe PubMed Central

20 June 2017

language of work or name

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inferred from title

publication date

18 July 2007

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Europe PubMed Central

20 June 2017

Journal of Biomolecular NMR

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Europe PubMed Central

20 June 2017

39

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Europe PubMed Central

20 June 2017

1

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Europe PubMed Central

20 June 2017

31-52

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Europe PubMed Central

20 June 2017

https://scigraph.springernature.com/pub.10.1007/s10858-007-9175-5

0 references

AURELIA, a program for computer-aided analysis of multidimensional NMR spectra.

1 reference

https://api.crossref.org/works/10.1007%2FS10858-007-9175-5

21 January 2018

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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The penultimate rotamer library

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated sequencing of amino acid spin systems in proteins using multidimensional HCC(CO)NH-TOCSY spectroscopy and constraint propagation methods from artificial intelligence

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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WHAT IF: a molecular modeling and drug design program

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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The program XEASY for computer-supported NMR spectral analysis of biological macromolecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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Automated backbone assignment of labeled proteins using the threshold accepting algorithm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated analysis of protein NMR assignments using methods from artificial intelligence.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated resonance assignment of proteins using heteronuclear 3D NMR. 2. Side chain and sequence-specific assignment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein sequential resonance assignments by combinatorial enumeration using 13C alpha chemical shifts and their (i, i-1) sequential connectivities

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PACES: Protein sequential assignment by computer-assisted exhaustive search.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assignment validation software suite for the evaluation and presentation of protein resonance assignment data

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automation of NMR structure determination of proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cell-free production and stable-isotope labeling of milligram quantities of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR View: A computer program for the visualization and analysis of NMR data

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated probabilistic method for assigning backbone resonances of (13C,15N)-labeled proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

iDC: A comprehensive toolkit for the analysis of residual dipolar couplings for macromolecular structure determination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein heteronuclear NMR assignments using mean-field simulated annealing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NvAssign: protein NMR spectral assignment with NMRView

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Homology modeling, model and software evaluation: three related resources

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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Smartnotebook: a semi-automated approach to protein sequential NMR resonance assignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated sequence-specific NMR assignment of homologous proteins using the program GARANT.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A framework for scientific data modeling and automated software development

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated analysis of protein NMR assignments and structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tracked approach for automated NMR assignments in proteins (TATAPRO).

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CAMRA: chemical shift based computer aided protein NMR assignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The interpretation of protein structures: Estimation of static accessibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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The CCPN project: an interim report on a data model for the NMR community

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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The CCPN data model for NMR spectroscopy: development of a software pipeline

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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Quantitative evaluation of experimental NMR restraints.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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Errors in protein structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

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Preparation of Escherichia coli cell extract for highly productive cell-free protein expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S10858-007-9175-5

1 reference

Europe PubMed Central

20 June 2017

1 reference

Europe PubMed Central

20 June 2017

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