A site- and time-heterogeneous model of amino acid replacement. (Q30367472)

21 June 2017

A site- and time-heterogeneous model of amino acid replacement. (English)

1 reference

21 June 2017

Samuel Blanquart

1

1 reference

PubMed ID

18234708

21 June 2017

Nicolas Lartillot

series ordinal

2

1 reference

21 June 2017

29 January 2008

1 reference

Molecular Biology and Evolution

21 June 2017

1 reference

21 June 2017

25

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21 June 2017

5

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21 June 2017

842-858

1 reference

A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution

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1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Bayesian model adequacy and choice in phylogenetics.

21 January 2018

1 reference

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Efficient likelihood computations with nonreversible models of evolution.

21 January 2018

1 reference

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The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei (Hymenoptera: Symphyta: Pergidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

An alternative model of amino acid replacement

21 January 2018

1 reference

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Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation

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1 reference

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Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Comment on "Hexapod origins: monophyletic or paraphyletic?".

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Modeling compositional heterogeneity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Maximum-likelihood phylogenetic analysis under a covarion-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

21 January 2018

1 reference

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A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

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1 reference

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A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model.

21 January 2018

1 reference

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Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.

21 January 2018

1 reference

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An expectation maximization algorithm for training hidden substitution models.

21 January 2018

1 reference

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RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

The rapid generation of mutation data matrices from protein sequences

21 January 2018

1 reference

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Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution.

21 January 2018

1 reference

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Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence

21 January 2018

1 reference

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A new method for calculating evolutionary substitution rates

21 January 2018

1 reference

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Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes

21 January 2018

1 reference

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Substitutional bias confounds inference of cyanelle origins from sequence data

21 January 2018

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Gene distribution and isochore organization in the nuclear genome of plants

21 January 2018

1 reference

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The evolution of base composition and phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Hexapod origins: monophyletic or paraphyletic?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Protein evolution with dependence among codons due to tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

The general stochastic model of nucleotide substitution

21 January 2018

1 reference

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Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content

21 January 2018

1 reference

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Evolution of proteomes: fundamental signatures and global trends in amino acid compositions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Modeling the covarion hypothesis of nucleotide substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

The Phylogeny of the Extant Hexapod Orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

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Phylogeny of the holometabolous insect orders: molecular evidence

21 January 2018

1 reference

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

1 reference

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A Bayesian Analysis of Some Nonparametric Problems

21 January 2018

1 reference

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Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

Dating the Cenancester of Organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN018

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSN018

1 reference

21 June 2017

1 reference

PubMed ID

18234708