Prediction of reversibly oxidized protein cysteine thiols using protein structure properties (Q30367869)

14 October 2017

Prediction of reversibly oxidized protein cysteine thiols using protein structure properties (English)

1 reference

protein structure prediction

14 October 2017

0 references

author name string

Ricardo Sanchez

1

1 reference

14 October 2017

Megan Riddle

2

1 reference

14 October 2017

Jongwook Woo

3

1 reference

14 October 2017

Jamil Momand

4

1 reference

14 October 2017

1 March 2008

1 reference

14 October 2017

1 reference

14 October 2017

17

1 reference

14 October 2017

3

1 reference

14 October 2017

473-481

1 reference

ERp57 and PDI: multifunctional protein disulfide isomerases with similar domain architectures but differing substrate-partner associations.

14 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Thiol-based mechanisms of the thioredoxin and glutaredoxin systems: implications for diseases in the cardiovascular system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Benchmarking pK(a) prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

2-Cys peroxiredoxin function in intracellular signal transduction: therapeutic implications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Oxidoreduction of protein thiols in redox regulation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Very fast empirical prediction and rationalization of protein pKa values

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

PCE: web tools to compute protein continuum electrostatics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

GDAP: a web tool for genome-wide protein disulfide bond prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Protein sulfenic acids in redox signaling.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Not every disulfide lasts forever: disulfide bond formation as a redox switch

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Reversing the Inactivation of Peroxiredoxins Caused by Cysteine Sulfinic Acid Formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Peroxiredoxin evolution and the regulation of hydrogen peroxide signaling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Oxidant signals and oxidative stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Protein disulfide bond formation in prokaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Identification of a peroxide-sensitive redox switch at the CXXC motif in the human mitochondrial branched chain aminotransferase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Reversible inactivation of the tumor suppressor PTEN by H2O2

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Structural basis of the redox switch in the OxyR transcription factor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Oxidative modification of H-ras: S-thiolation and S-nitrosylation of reactive cysteines

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Predicting the oxidation state of cysteines by multiple sequence alignment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Regulation of the OxyR transcription factor by hydrogen peroxide and the cellular thiol-disulfide status

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Activation of the OxyR transcription factor by reversible disulfide bond formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Active site labeling of the Yersinia protein tyrosine phosphatase: the determination of the pKa of the active site cysteine and the function of the conserved histidine 402.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Protein sulfhydryls and their role in the antioxidant function of protein S-thiolation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

The interpretation of protein structures: Estimation of static accessibility

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Basic local alignment search tool

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

Macroscopic electrostatic models for protonation states in proteins

3 June 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.073252408

Copper uptake is required for pyrrolidine dithiocarbamate-mediated oxidation and protein level increase of p53 in cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.073252408

Irreversible thiol oxidation in carbonic anhydrase III: protection by S-glutathiolation and detection in aging rats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.073252408

OhrR, a transcription repressor that senses and responds to changes in organic peroxide levels in Xanthomonas campestris pv. phaseoli

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.073252408

S-glutathiolation by peroxynitrite of p21ras at cysteine-118 mediates its direct activation and downstream signaling in endothelial cells

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248312

S-thiolation of cytoplasmic cardiac creatine kinase in heart cells treated with diamide

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18287280

12 December 2020

inferred from PubMed ID database lookup

S-nitrosylation and S-glutathiolation of protein sulfhydryls by S-nitroso glutathione

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18287280

12 December 2020

inferred from PubMed ID database lookup

Assignment of the zinc ligands in RsrA, a redox-sensing ZAS protein from Streptomyces coelicolor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18287280

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1110/PS.073252408

1 reference

release_x2km54xmcjee5aety7isxyb73e

14 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/x2km54xmcjee5aety7isxyb73e

24 November 2022

mapped directly with Wikidata item

1 reference

14 October 2017

1 reference